Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq103000 118 2e-21 seq260794 89.7 1e-12 >seq103000 Length=415 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| |||||| | || | || | ||| | ||||| |||||| |||||| Sbjct 174 ATTCCTCCTCGAAGACGGAGAACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATCA 233 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| ||||| || || || |||||||||| | || ||||| ||| Sbjct 234 GAAAGAGTGCGTCCATCTTCCAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGATCCGGT 293 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| || || || ||||| || | || || | || Sbjct 294 GGGATTCCTTCTTTGTCTTGAATCTTTGCCTTCACATTTTCAATGGTGTCGGAGGCCTCA 353 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| ||||| || |||| ||||| | ||| |||||||| Sbjct 354 ACCTCGAGTGTAATTGTTTTCCCGGTTAGGGTTTTCACAAAGATCTGCAT 403 >seq260794 Length=213 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 192339 AGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACC 192398 ||||| |||||| ||| || ||||| || || || ||| |||| || | |||||| || Sbjct 61 AGTAGACTCTTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATCTTCGAGTTGTTTGCC 120 Query 192399 AGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452 ||||||||| | || ||| ||||| || || ||||||||||| || || || || Sbjct 121 AGCAAAGATCAGTCGCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTT 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980989487703750