Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq388 95.1 4e-14 seq67 84.2 6e-11 >seq388 Length=724255 Score = 95.1 bits (104), Expect = 4e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || |||||||| || || || || ||||||| ||||| ||||| Sbjct 363672 ACCAGTCTCAGCAGTCTTGACAGCTGTGTCGATGAGCCCCTCACGACCCCCCATGGCATG 363731 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 |||||| | ||| ||| || || | | ||||| |||| ||||| ||||| Sbjct 363732 GAAGAAAAACTCAGTGGGTGTGAGGCCGGCCAGGTAGGAGTTCTCCACGAAGCCACGGCT 363791 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||| ||| || ||| ||| | ||||| ||||| |||| || || | || | || Sbjct 363792 CTCAGGCCCATAGTCATCTTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAATCCAAACGG 363851 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCC 302816 ||| ||||| || || ||||||||||| || Sbjct 363852 GATCCGCTTGCCCTCCACGTTCTGCTGCCC 363881 >seq67 Length=8482231 Score = 84.2 bits (92), Expect = 6e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 448887 GCTACGCCCGAGGAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGAT 448946 ||| | || ||||| || || ||||| ||| | | | ||| ||||| || |||||| Sbjct 5719580 GCTTCACCTGAGGACATTAAAAAGGCTTATCGAAAAGTGGCACTTAAATGGCACCCTGAT 5719521 Query 448947 AAAAATCCAGATAATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTAT 449006 ||||||||||| ||||||| ||| || ||| ||||||||||| | || | || ||| Sbjct 5719520 AAAAATCCAGAAAATAAAGAAGAAGCCGAGAGAAAATTCAAAGAAGTAGCTGAGGCATAT 5719461 Query 449007 GAAATTGTAACAAATAAAGAAAAA 449030 || | || ||||| | |||||| Sbjct 5719460 GAGGTATTATCAAATGATGAAAAA 5719437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1466599213206325