Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq103000 149 6e-31 seq150 111 1e-19 seq299 109 5e-19 seq83363 105 6e-18 seq98 93.3 4e-14 seq182 89.7 5e-13 seq260794 87.8 2e-12 >seq103000 Length=415 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| |||||||| ||||| ||||| ||||| || || ||| || Sbjct 403 ATGCAGATCTTTGTGAAAACCCTAACCGGGAAAACAATTACACTCGAGGTTGAGGCCTCC 344 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||| ||||||||||||||||| || || ||||| Sbjct 343 GACACCATTGAAAATGTGAAGGCAAAGATTCAAGACAAAGAAGGAATCCCACCGGATCAG 284 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| | ||||||||||| || ||| |||| ||| | | | || ||||| || Sbjct 283 CAACGGCTAATCTTTGCCGGAAAGCAGTTGGAAGATGGACGCACTCTTTCTGATTACAAT 224 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||||| || || ||| | || | || | || ||||| Sbjct 223 ATCCAGAAAGAATCAACTCTTCACCTTGTTCTCCGTCTTCGAGGAGG 177 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || ||||| || || || ||||| || ||| | Sbjct 175 ATGCAGATCTTTGTGAAGACTCTGACTGGAAAAACAATCACTCTTGAAGTCGAGGCCTCA 116 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| || || |||||||| |||||||| || || ||||| Sbjct 115 GACACAATCGAGAATGTGAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCAGATCAG 56 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || | || |||||||| || || || || || Sbjct 55 CAGCGACTTATTTTTGCCGGCAAGCAACTAGAAGA 21 >seq150 Length=4498840 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || ||||| || || ||| Sbjct 34408 GATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 34349 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| || ||||||||||| || || || || || ||||| Sbjct 34348 TGACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGATCA 34289 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || |||| |||| || |||||||| |||||| | | ||||||| || || Sbjct 34288 GCAGTGTCTGATTTTTGTGGGCAAACAGCTAGAGGATGGCCGCACTCTGTCAGACTACAA 34229 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| ||||| || || || ||||| ||| Sbjct 34228 TATTCAGAAGGAGTCCACCCTGCACTTAGTG 34198 >seq299 Length=1488728 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 24733 TAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGAT 24792 ||| || || || || || || || ||| ||||| | |||| || || | ||| Sbjct 453299 TAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAAAATGTCAAGGGGACGAT 453240 Query 24793 CCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCT 24852 |||||| ||||| || || | ||| || || || | ||||||||||| ||||||||||| Sbjct 453239 CCAAGAAAAAGAGGGCATCCTTCCAGACCAGCAGAGGTTGATCTTTGCTGGGAAACAGCT 453180 Query 24853 GGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| ||| | | | | |||| || || ||||| || |||||||| || || |||||||| Sbjct 453179 GGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAATCCACTCTGCACTTGGT 453120 Query 24913 GTTGCGATTGCGCGGAGG 24930 |||| || | ||||| Sbjct 453119 CCTGCGCTTAAGGGGAGG 453102 >seq83363 Length=456 Score = 105 bits (116), Expect = 6e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| | || || || || || || | ||||| |||||| | Sbjct 173 ATGCAAATTTTCGTAAAAACCTTGACGGGGAAGACCATCACTTTGGAAGTGGAAGCCTCT 232 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || || || |||||||| |||||||| || || ||||| Sbjct 233 GATACAATCGAGAATGTGAAGGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAG 292 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||||||||| |||||||| || ||| | | | | || || || ||| Sbjct 293 CAGCGTCTCATCTTTGCCGGAAAACAGCTTGAAGATGGACGTACCCTCTCTGACTACAAC 352 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || ||||||||||| || || || |||| Sbjct 353 ATCCAAAAGGAATCAACCCTCCATCTTG 380 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 || || || ||||| |||||||| || || |||||||| ||| | || || || || || Sbjct 29 AAAATTCAGGACAAGGAAGGAATTCCACCTGATCAACAGCGTCTTATTTTCGCAGGAAAG 88 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || || ||| | | | | || |||||||||||||||||||| || || || ||| Sbjct 89 CAACTTGAAGATGGGCGTACACTCTCCGATTATAACATTCAAAAGGAGTCAACCCTTCAC 148 Query 24908 TTGGTGTTGCGATTGCGCGGAGGC 24931 | ||| | || | || |||||| Sbjct 149 CTTGTGCTCCGTCTTCGAGGAGGC 172 >seq98 Length=6767347 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || | || ||||| || || || || || || || || Sbjct 4449099 ACAATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCC 4449158 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | |||| || || ||||||||||| ||||| || || || || || Sbjct 4449159 AGTGACACCATCGAAAATGTCAAGGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCAGAC 4449218 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || || | ||||||||||| |||||||||||||| ||| Sbjct 4449219 CAGCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGAT 4449257 >seq182 Length=3864254 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || || ||| | Sbjct 2229629 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 2229688 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || ||||| || || Sbjct 2229689 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 2229748 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| || || || |||||||| ||| | | | || ||||| ||| Sbjct 2229749 CAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 2229808 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| ||||| || || |||| Sbjct 2229809 ATCCAGAAGGAGTCGACCCTGCATCTGGT 2229837 >seq260794 Length=213 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 24755 GAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCT 24814 || ||| | ||||| | |||| || || |||||||| |||||||||||||| || Sbjct 207 GAGGCCTCTGACACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAAGAAGGAATCCCC 148 Query 24815 CCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCA 24874 || ||||| || || |||||||||| || ||||| || || ||| | | |||| Sbjct 147 CCAGATCAGCAGCGACTGATCTTTGCTGGCAAACAACTCGAAGATGGACGCACTTTGTCC 88 Query 24875 GATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || || || || ||| |||| | ||| | || || || Sbjct 87 GATTACAACATCCAGAAAGAGTCTACTCTCCACCTGGTTCTCCGACTACGTGGTGG 32 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448341376083000