Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq182 122 6e-23 seq150 118 7e-22 seq584 111 1e-19 seq103000 93.3 3e-14 seq83363 82.4 5e-11 seq98 82.4 5e-11 seq15 82.4 5e-11 >seq182 Length=3864254 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||| || | ||| ||||||||| ||||| || || || Sbjct 2229627 CCACCCCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGGAA 2229568 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || |||||||| || | |||||||| | || Sbjct 2229567 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGGGGG 2229508 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | || || || ||| | || | ||| ||| ||| || Sbjct 2229507 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 2229448 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| ||||| | |||||| || ||||||||||| Sbjct 2229447 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2229401 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | |||||||| || | ||| ||||||||| ||||| || || || Sbjct 2229855 CCACCCCTCAGACGGAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 2229796 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || |||||||| || | |||||||| | || Sbjct 2229795 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGG 2229736 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | || || || ||| | || | || ||| ||| || Sbjct 2229735 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACC 2229676 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || || |||||||| || ||||||||||| Sbjct 2229675 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2229629 >seq150 Length=4498840 Score = 118 bits (130), Expect = 7e-22 Identities = 151/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 34774 GTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTG 34833 ||| | |||| |||||||||||| || ||||| || || |||| |||| || || || Sbjct 34204 GTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGAGTGCGGCCATCCTCTAGCTG 34263 Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 || || | || ||||| | ||||| || | || | ||||||||||| | ||||| Sbjct 34264 TTTGCCCACAAAAATCAGACACTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGGATTTT 34323 Query 34894 TTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCC 34951 |||||| || || || | ||| ||| ||| || || | ||| |||||||| ||| Sbjct 34324 AGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCC 34381 Query 34952 GTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||| |||||||||||||| Sbjct 34382 GTCAGGGTCTTCACAAAGATCTGCAT 34407 >seq584 Length=118070 Score = 111 bits (122), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||| ||| |||||||| || ||||| ||| | || | |||| Sbjct 48984 AGCACCAAGTGCAAGGTGGACTCATTCTGAATATTGTAGTCTGATGGAGTGTGGCCATCC 49043 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || | | || ||||| | |||||||| | || | ||||||||||| Sbjct 49044 TCCAGCTGTTTGCTCACAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 49103 Query 34886 TTTATTTTTTGTTTGACGGATGCT-ATCGAT-TCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| |||||| || || | ||| ||| ||| || || |||| ||| |||| Sbjct 49104 TGGATTTTAACTTTGAC--ATTCTCAATGATGTCACTGGGCTTAACCTCAAGGGTGATGG 49161 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || | |||||||| |||||||||||||| Sbjct 49162 TCTTGCCTATCAGGGTCTTCACAAAGATCTGCAT 49195 >seq103000 Length=415 Score = 93.3 bits (102), Expect = 3e-14 Identities = 128/177 (72%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 34803 AGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGT 34862 |||| || ||| | || | || || |||||||| ||||| || || ||||| ||||| | Sbjct 1 AGTCGGAAAGGGTACGGCCGTCTTCTAGTTGCTTGCCGGCAAAAATAAGTCGCTGCTGAT 60 Query 34863 CTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATT 34920 || | || | || |||||||| | ||||| ||| || || || || | || Sbjct 61 CTGGTGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTCAC--ATTCTCGATTGTGTCTGA 118 Query 34921 GGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| |||| || || || ||||| || || ||||| |||||||||||||| Sbjct 119 GGCCTCGACTTCAAGAGTGATTGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCAT 175 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| || || ||||| || || || || || || |||| |||| Sbjct 192 AGAACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATCAGAAAGAGTGCGTCCATCT 251 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||||||||| ||||| || |||||||| || | || | || || ||||| Sbjct 252 TCCAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGATCCGGTGGGATTCCTTCTTTGTCT 311 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| || || | | || | || |||||| || || | || || || Sbjct 312 TGAATCTTTGCCTTCACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGTGTAATTGTT 371 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || ||||| || ||||||||||||||| Sbjct 372 TTCCCGGTTAGGGTTTTCACAAAGATCTGCATG 404 >seq83363 Length=456 Score = 82.4 bits (90), Expect = 5e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| |||||| ||||||||||| || || || | ||| |||| Sbjct 156 AGCACAAGGTGAAGGGTTGACTCCTTTTGAATGTTATAATCGGAGAGTGTACGCCCATCT 97 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| ||||| || || || || || || | || | || |||||||| Sbjct 96 TCAAGTTGCTTTCCTGCGAAAATAAGACGCTGTTGATCAGGTGGAATTCCTTCCTTGTCC 37 Query 34886 TTTATTTT 34893 | ||||| Sbjct 36 TGAATTTT 29 >seq98 Length=6767347 Score = 82.4 bits (90), Expect = 5e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 34818 GCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCT 34877 || |||| ||||| || || || || ||||||| | ||||||||| | || | |||| Sbjct 4449261 GCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCT 4449202 Query 34878 CCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGG 34937 | || || | || || ||||| | | || | ||| ||| ||| || || | || Sbjct 4449201 CTTTTTCTTGGATCTTCCCCTTGACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGG 4449142 Query 34938 TTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||||||| ||||| | |||||| || ||||||||||| Sbjct 4449141 TGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 4449102 >seq15 Length=17131269 Score = 82.4 bits (90), Expect = 5e-11 Identities = 83/106 (78%), Gaps = 4/106 (4%) Strand=Plus/Plus Query 34874 CCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACAT 34931 ||||||||||| | ||||| |||||| || || || | ||| ||| ||| || | Sbjct 15347347 CCCTCCTTGTCTTGGATTTTAGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCAACCT 15347404 Query 34932 CAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||| |||||||| ||||| |||||||| |||||||||||||| Sbjct 15347405 CAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 15347450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324594373042775