Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq103000 118 8e-22 seq182 91.5 1e-13 seq260794 87.8 1e-12 >seq103000 Length=415 Score = 118 bits (130), Expect = 8e-22 Identities = 170/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||| || || | ||||| || |||||||| || || || ||||| | Sbjct 176 TCCTCCTCGAAGACGGAGAACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATCAGA 235 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||||| ||| || | || || || ||| | || | | |||||||||||| || Sbjct 236 AAGAGTGCGTCCATCTTCCAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGATCCGGTGG 295 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || ||||||||||| ||| |||| || ||| |||| | ||||| || || | Sbjct 296 GATTCCTTCTTTGTCTTG-AATCTTTGCCTTCACATTTTCAATGGTGTCGGAGGCCTCAA 354 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAAC 29794 | || || || || ||||| || |||| |||||| ||||| |||||||| | |||| Sbjct 355 CCTCGAGTGTAATTGTTTTCCCGGTTAGGGTTTTCACAAAGATCTGCATGCTCAAAC 411 Score = 96.9 bits (106), Expect = 3e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || ||||| ||||| ||| | || | || |||||||| || || || || || ||| Sbjct 21 TCTTCTAGTTGCTTGCCGGCAAAAATAAGTCGCTGCTGATCTGGTGGGATTCCTTCCTTG 80 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| |||||| | ||| ||| | || | ||||| || || ||||||||||| || Sbjct 81 TCTTG-AATTTTGGCTTTCACATTCTCGATTGTGTCTGAGGCCTCGACTTCAAGAGTGAT 139 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| ||||| | || || ||||| ||||||||| Sbjct 140 TGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCATT 176 >seq182 Length=3864254 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| |||||| |||| ||| || || || || || || ||||| ||||| | | Sbjct 2229627 CCACCCCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGGAA 2229568 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || ||||| || | || | || ||||| || || || Sbjct 2229567 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGGGGG 2229508 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | || || || | || | |||||| | || || Sbjct 2229507 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 2229448 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || ||||| || ||||| || || || ||||||||||| Sbjct 2229447 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTT 2229398 >seq260794 Length=213 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || || || ||||| || ||||| ||||| | | ||||| | Sbjct 44 CGGAGAACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAATCGGACAAAGTGCGTCCA 103 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || |||||||||||||||||| | |||| || |||||||| || || || || |||||| Sbjct 104 TCTTCGAGTTGTTTGCCAGCAAAGATCAGTCGCTGCTGATCTGGGGGGATTCCTTCTTTG 163 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGA 29729 || || | || || || |||| | |||||||| Sbjct 164 TCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCAGA 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 383920015143225