Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq135 239 3e-57 seq50770 210 2e-48 seq374 140 2e-27 seq211 131 1e-24 seq189 109 4e-18 seq102 104 2e-16 seq8532 100 2e-15 seq27 96.9 3e-14 >seq135 Length=4864652 Score = 239 bits (264), Expect = 3e-57 Identities = 690/1050 (66%), Gaps = 29/1050 (3%) Strand=Plus/Plus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 ||||| | |||| ||||| ||| || ||||||||| | | |||||| ||||||||||| Sbjct 2806222 TTATCCACAGCAGACACATCAAGGATTCCATTGGCACCAACATCAAAAGTGACTTCAATC 2806281 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTA--T 281534 ||||| || || | | ||||| || || ||| | || || || ||| | || | Sbjct 2806282 TGAGGAACGCCACAGGGGGCAGGAGGAATGCCTGTGAG-TTCAACCTTGCCA-AGTAGGT 2806339 Query 281535 TATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGAT 281594 | ||||| || || | || ||||| || ||| || || || ||| || | Sbjct 2806340 TGTTATCCTTGGTCATGGCACGCTCACCGTCACAAACCTGAATGAGCACACCAGGCTGGT 2806399 Query 281595 TATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAA 281654 | || || || || || || | | | ||| ||||| || || || | | | Sbjct 2806400 TGTCGGAGTAGGTGGTGAAGGTTTGCGTCTGCTTAGTGGGAATGGTGGTATTGCGCTTGA 2806459 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 | | |||||| | |||||||| | ||| | ||||| ||||||||||||||||| | Sbjct 2806460 TGAGGACGGTCATGACTCCACCAGCAGGTTCGATTCCAAGGGAAAGAGGAGTGACATCCA 2806519 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774 ||| | | | ||||| |||||| | | ||| | ||| ||||| || | || Sbjct 2806520 ATAGCAGCAAGTCTTGAACATTTTCAGATTTGTCTCCAGATAAAATGGCTGCCTGGACAG 2806579 Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834 | |||||||| |||||||| |||||||| |||| | | ||| | || ||| ||||||| Sbjct 2806580 CTGCACCATAAGCAACAGCCTCATCAGGGTTAATGCTCTTATTCACTTCTTTCCCATTGA 2806639 Query 281835 AAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACA 281893 | || | ||||||| ||| | ||| || ||||| | ||| ||||| || | ||| Sbjct 2806640 AGAAGTCCTGCAGAAGTT-TCTGAATCTTGGGGATACGGGTTGAGCCTCCCACCAGGACA 2806698 Query 281894 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 281953 || ||||| | ||| || || || ||||||| |||| | |||| || || || || Sbjct 2806699 ATGTCATGGATCTGAGACTTGTCTAGTTTTGCATCCCGAGGAGCTTTCTCCACAGGGTCC 2806758 Query 281954 AGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 282013 || | | |||| ||| | | | |||||| ||| || | |||| || | | Sbjct 2806759 AGGGTGCCACAGAACAGGTCAGCATTTAATTCTTCAAATCGGGCACGGGTAACAGAGGTA 2806818 Query 282014 TTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAG---TCGAAGAA 282070 | | || ||| |||| | | ||||||| ||||| | || | | |||| | Sbjct 2806819 TAGAAGTCGATTTCTTCAGAGAGGGAATCAATCTCAATACTGACCTGGGTGCTGGAAG-A 2806877 Query 282071 GATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG--------CTT 282122 || ||||||| |||||||| ||||| || || | || | || | || ||| Sbjct 2806878 GAGAGTGCAC--TTAGCACGCTCACAAGCAGTGCGGAGGCGACG-ACGGACAGCCCTCTT 2806934 Query 282123 TTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--T 282180 | || |||| || | || | || | |||||| ||| ||| | | ||| | Sbjct 2806935 GTTCTCGCTGAT----GTCCTTCTTGTGCTTCCGCTTGAACTCTGCAATAAA--ATGGTT 2806988 Query 282181 TACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTAC 282240 || | | || ||||| || || || || | | |||| ||| | |||| | | || Sbjct 2806989 GACCATGTGGTTGTCAAAGTCCTCTCCACCTAGGTGGGTATCTCCGGTAGTAGATTTGAC 2807048 Query 282241 TTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATC 282300 | || | |||||| |||| || | | | |||||| || |||||||||| || Sbjct 2807049 ATCAAAGATTCCATCCTCAATAGTAAGGATTGGCACATCAAAAGTGCCACCACCCAAGTC 2807108 Query 282301 AAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGC 282360 ||| || || ||||| |||| | ||||| || | |||| |||| |||||| Sbjct 2807109 AAAGATCAGCACATTTCTTTCAGCTCCAACCTTTTTGTCTAAGCCATTAGCAACAGCAGC 2807168 Query 282361 AGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTT 282420 ||||||||| |||||||| ||||| | ||||| ||||||||||| ||||| |||||||| Sbjct 2807169 AGCAGTTGGCTCATTAATGATTCTAAGTACATTGAGACCAGCAATACTTCCAGCATCTTT 2807228 Query 282421 AGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450 || || || | || || || || ||||| Sbjct 2807229 GGTAGCCTGACACTGAGAGTCATTGAAATA 2807258 >seq50770 Length=559 Score = 210 bits (232), Expect = 2e-48 Identities = 372/538 (69%), Gaps = 7/538 (1%) Strand=Plus/Minus Query 282341 AGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCA 282400 || || || || | |||||| |||||||||||||| || || | | |||||| || ||| Sbjct 558 AGTCCGTAGGCGATAGCAGCGGCAGTTGGTTCATTGATGATACGAAGAACATTCAGGCCA 499 Query 282401 GCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACA 282460 ||||| ||| |||||||| |||||||| | || |||||||| || || || || || Sbjct 498 GCAATGGCTCCAGCATCTTTGGTGGCTTGACGCTGGGAATCGTTGAAGTAGGCTGGCACT 439 Query 282461 GTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTA 282520 || | |||||||| | || ||||| |||| ||| || | ||||| || Sbjct 438 GTGACGACGGCATCCTTAACAGGAGATCCAAGGAAAGCCTCTGCGGTGTCCTTCATCTTC 379 Query 282521 CTTAAAATCATTGATGAAATTTGTTCTGGAG--AATATTGCTTGGATTCATTTTGATATG 282578 ||| || ||||||||| || | || || | || | | |||| ||| | ||| Sbjct 378 GTTAGAACCATTGATGAGATCTCCTCCGGGGTGAAGACT--TTGGTTTCGCCCTTGTATT 321 Query 282579 ATACTTCAAAATATGGTTTATTACCAACA--TTA-ATAACTTTAAATGGCCAATATTTCA 282635 |||| || | || || || | | | | |||||| |||||||||| |||| Sbjct 320 CGACTTGAACCTTAGGCTTGGAGCCCTCGGCTGACACAACTTTGAATGGCCAATGCTTCA 261 Query 282636 TATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAA 282695 |||| ||||| || | | || | ||| | | ||||| ||||| || ||||| || | Sbjct 260 TATCGGATTGGACTGCTGGATCGTCAAATTTGCGTCCAATCAATCGCTTGGCATCGAATA 201 Query 282696 TAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTG 282755 ||| ||| ||||| | || | |||| ||||| ||||||||||| || |||||| Sbjct 200 CAGTGTTGTGAGGATTCATGGCCACCTGATTCTTGGCGGCATCTCCAATAAGTCGTTCTG 141 Query 282756 TCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTT 282815 | || || |||| |||||| || || |||||||| |||||||||||||| || ||||||| Sbjct 140 TGTCCGTGAATGCAACATAGGAAGGTGTTGTGCGGTTACCTTGATCATTGGCGATAATTT 81 Query 282816 CAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACC 282873 | ||||| || | | ||||| ||||| | | || || || | |||||| || Sbjct 80 CCACTTTTCCGTGCATGAAGACACCCACACACGAATACGTGGTGCCAAGATCAATTCC 23 >seq374 Length=747316 Score = 140 bits (154), Expect = 2e-27 Identities = 199/278 (72%), Gaps = 8/278 (3%) Strand=Plus/Minus Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 |||| ||||| |||| || | | |||||| |||||| ||||||||| ||||| | Sbjct 269885 AATCATCACCACCCAGGTTGTTGTCTCCTGAAGTAGCTAAAACTTGGAAAGTCCCATCCT 269826 Query 282258 CAAGAGA----CAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 | |||| || | || |||||| || || ||||| | ||| ||| ||||| Sbjct 269825 CT-GAGATTTCCAGCACAGAGACATCAAATGTACCTCCACCAAGGTCATAAACAAGTATC 269767 Query 282314 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 282373 || | || |||||| | || ||||||||||| || || |||||||| || ||||| Sbjct 269766 TTTGTGTCCTTGTCTC---TCTTGTCAAGACCATAGGCTAATGCAGCAGCTGTAGGTTCG 269710 Query 282374 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 282433 |||| |||||| | ||||| | || |||||||| |||||| ||| ||| | | |||| Sbjct 269709 TTAACAATTCTTACAACATCTAATCCCGCAATTCTCCCTGCAACTTCAGTTGACTTTCTT 269650 Query 282434 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 || | || ||||| || || ||||| |||||||| || Sbjct 269649 TGAGGGTCATTAAAGTAAGCTGGAACTGTAATAACTGC 269612 >seq211 Length=2993106 Score = 131 bits (144), Expect = 1e-24 Identities = 366/554 (66%), Gaps = 6/554 (1%) Strand=Plus/Plus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGTCTTGGT 282332 |||||| || || ||||||| |||||| || || || | || | || || | || | Sbjct 2469492 ACATCAAATGTGCCTCCACCCAGATCAAAGATTAGGACGTGTCGCTCTCCCTGACCTGCT 2469551 Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392 || | | ||| ||||| |||| |||||||| || ||||| || |||||||| | || | Sbjct 2469552 TTATCT-AAG-CCATAAGCAATGGCAGCAGCTGTGGGTTCGTTGATAATTCTTAGCACGT 2469609 Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452 | ||||| ||||| |||||||| || ||||| || | || || || || ||||| | Sbjct 2469610 TGAGACCTGCAATCACACCTGCATCCTTGGTGGCCTGGCGCTGAGAGTCATTGAAATAGG 2469669 Query 282453 CAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTT 282512 | || || || || || |||| || || | || | | |||| || || | | Sbjct 2469670 CTGGCACGGTGATCACAGCATTGGTGACAGTGTGGCCCAAAAAAGCCTCAGCAGTCTCCT 2469729 Query 282513 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGAT-TCATTT 282571 |||| ||| | | | ||| || || |||| || || | | | |||| | || | Sbjct 2469730 TCATCTTAGTCAGTACCATAGAAGAGATTTCCTCAGG-GTAGAAAGCTTTTTTCTCCCCT 2469788 Query 282572 TGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATAT 282631 | || || || | | || || || |||| || |||| ||| |||||| | Sbjct 2469789 TTGTAGGACACCATTACCTTGGGCTTGCCTCCTTCATTGATTACTTGAAAAGGCCAAAGT 2469848 Query 282632 TTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCA 282691 |||||||||||||| || | |||||||| | || ||||| | ||||| |||||| Sbjct 2469849 TTCATATCTGATTGCACTACAGGATCATTAAATTTCCTGCCAATCAGACGTTTGGCATCA 2469908 Query 282692 AAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 282751 || | ||| || |||||| | || | || | ||||||||||| || || || | Sbjct 2469909 AAGACAGTGTTCTGTGGATTCATGGCTACCTGGTTCTTGGCTGCATCGCCGATGAGCCGC 2469968 Query 282752 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 282811 || || || || || | || || || || ||||| || || || || || || || Sbjct 2469969 TCGGTGTCCGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTGCCCTGGTCGTTGGCGATG 2470028 Query 282812 ATTTCAACTTTACC 282825 || || || || || Sbjct 2470029 ATCTCCACCTTGCC 2470042 >seq189 Length=3499031 Score = 109 bits (120), Expect = 4e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || ||||||||||||| ||||||||||| || ||| | || |||||| | Sbjct 2962794 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 2962735 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || |||||||||| | ||||| ||||| || |||||||||||| | | |||||| | Sbjct 2962734 GTGGTTGGAAGAGACAAATATGGGGTTTTTCCTCTTAGAGGAAAAATACTCAATGTTCGA 2962675 Query 400417 GATGCTAGTCCTAAA 400431 || ||| || |||| Sbjct 2962674 GAAGCTTCTCATAAA 2962660 >seq102 Length=6315829 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | |||||||||| ||||||||||||||| ||||| || ||||| | ||| Sbjct 2149363 TTTTTGTCTAAGCCATACGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGTACA 2149422 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || || || || Sbjct 2149423 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTCGCCTGACGCTGAGAGTCATTGAAGTAC 2149482 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || || || | || |||| Sbjct 2149483 GCGGGTACTGTGACCACAGCAT 2149504 >seq8532 Length=1223 Score = 100 bits (110), Expect = 2e-15 Identities = 138/189 (73%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 ||||| | || || |||| |||||||| || || || || || | || || ||||| Sbjct 677 TTATCCAAGCCGTAGGCAAGGGCAGCAGCCGTGGGCTCGTTGATTACTCGCAGGACATTT 736 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | |||||||||| ||| ||||| || || || ||||| ||||| || || || || || Sbjct 737 AAACCAGCAATTTGTCCCGCATCCTTCGTAGCCTGTCTCTGTGAGTCATTGAAGTAAGCC 796 Query 282455 GGAACAGTAATAACGGCATCTGT-TACTTCTTTTCCAATATAAGCGCTT---GCTGTTTG 282510 |||||||||||||| |||| ||| ||| |||||| ||| |||| || |||| Sbjct 797 GGAACAGTAATAACAGCAT-TGTGTACAGTAGTTCCAAGATA---GCTTTCAGCAGTTTC 852 Query 282511 TTTCATTTT 282519 |||||| || Sbjct 853 TTTCATCTT 861 >seq27 Length=13153467 Score = 96.9 bits (106), Expect = 3e-14 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 131181 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 131240 |||| || ||||| ||||| ||||| ||||||||| | |||||| | || ||||||| Sbjct 9086700 TAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGATGTTCGCAAAGTCATTCATT 9086641 Query 131241 ACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 131300 | || ||||| ||| | || ||| ||||| || || ||||||||||| || ||||||| Sbjct 9086640 ATGGCGCTCCTAAGGAAATGGAATCATATTACCAGGAGATTGGTAGAGCTGGCCGTGATG 9086581 Query 131301 G 131301 | Sbjct 9086580 G 9086580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3727044371939850