Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq98 176 4e-39 >seq98 Length=6767347 Score = 176 bits (194), Expect = 4e-39 Identities = 478/725 (66%), Gaps = 85/725 (12%) Strand=Plus/Minus Query 1070 CCCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGC 1129 |||||||| || |||||||||||||||| ||||||| ||| || | | | ||||||| Sbjct 6391175 CCCACAGCCCTGGCTTCTGGTCTGAAAA-GAGTAGGCATCTTCTGGGTGCCATGGAAGGC 6391117 Query 1130 ATTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGT 1189 |||||||||||| ||||| ||| |||||||| | || |||||||||| | |||| ||| Sbjct 6391116 ATTTTAAAGAAATGGCTTGGAAGAAAAATCTCGAGGTCACTTACATAGTTATCCAAAAGC 6391057 Query 1190 TTTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTG----TATG--TCCCGTG-G 1242 | |||||||| || || || ||||| || ||| |||| ||| ||| | Sbjct 6391056 TCCTTAAATGAGATCTTTAACTCCTCGATTATGCCTCGTTGGTCATATGGTTCCGGTGTG 6390997 Query 1243 TAGTGGATGGCCGT--GGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGCA 1300 ||| | || || || | || || |||| ||| ||||||||| |||||| |||||| Sbjct 6390996 TAGGTGGGCGCTGTGCGGCATGACAGGAAGGGTCCCAAACAGCAGAACAGGAAAAGGGCA 6390937 Query 1301 AGCCCTGAAGATTTTGTAAAAATAGAGTAATGC-------CCACACACCCCCACCTGCCC 1353 || | | |||| || | | | ||| | |||| ||| || ||||| ||||||| Sbjct 6390936 AGTCTGGCAGATCCTGGAGAGAGAGAATGATGCTATGAAGCCAGACGCCCCCGCCTGCCC 6390877 Query 1354 CATACCTTAACCTGCCCAAGCTTTCACCACCG--AAGCTGTGCC------GGACTGAGCC 1405 | | || || |||| || | | |||| ||| || |||| || Sbjct 6390876 C--------AGCTTCCGTCGCTTAAGCCGCTGTTGGGCTGAGCCACCTCTGGGCTGACCC 6390825 Query 1406 CCATC-CAGTCTTTCTCTTTGTCTAGGGAAACTCGA--CCGCACCC--ACCAGCATCAAT 1460 || | ||||| |||| || || || || || | || ||| |||||| Sbjct 6390824 CCTGCGTGGTCTTCCTCTCCATCCAGAGACACCAGACTCTGCCCCCAAACCAGC------ 6390771 Query 1461 GGCTGTAGGACCTATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCG 1520 ||| | ||| | | || |||||| | |||| || || || |||||||| | || | Sbjct 6390770 GGCAGCAGGCCGCAGCGGTACCTGTGTGGGAGACCATGGCGGGAGAGAGAG-----GCTG 6390716 Query 1521 CTTTGGCAACAGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAA 1580 ||| ||| |||||| || ||| |||||||| || || | | |||| |||||||| Sbjct 6390715 CTTCGGCGACAGCTTCTGGAGCCTGATGTGCTGGCCATGGTCCTCGGGA--GGTATATAA 6390658 Query 1581 AGGGCTAGTTGTAAGG-AGGAGCAC--TAAAAGTACCGCCCACGGTAAAGTCATTACT-- 1635 ||||| ||| | |||| || || || | | || ||||||| | | | |||||||| Sbjct 6390657 AGGGCCAGTCGCAAGGAAGAAGGACCATCGATGTCCCGCCCATAGCAGAATCATTACTCA 6390598 Query 1636 ---------CAGAAAACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCT 1685 ||||||||| ||||||| || ||||| | ||||||| Sbjct 6390597 GCTTTTCTCCAGAAAACACTTTCAAAATTCTGCCACC----------------CAAGGCT 6390554 Query 1686 CGAAGGAAA---TGAAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACAC 1742 ||||||| ||| |||||||| ||| ||||| ||| |||| || | || | ||| Sbjct 6390553 GAAAGGAAACGCTGAGGTTACCCTGAAGGTGGGCCACTGCCTGACTCAGTCCAGACGCAC 6390494 Query 1743 ACCGG 1747 || || Sbjct 6390493 ACAGG 6390489 Score = 149 bits (164), Expect = 5e-31 Identities = 244/346 (71%), Gaps = 17/346 (5%) Strand=Plus/Minus Query 417 TTCAGGCACTTTGAAAACATTTCTAAAACACACTGTATGAACACttttttttGATAGCTG 476 |||||||| ||||||||| | ||||| | | ||||| ||| | || | | Sbjct 6392655 TTCAGGCAGTTTGAAAACTGCTTTAAAATAGTCAAGATGAATCTTTTCTGTTCAAATTGA 6392596 Query 477 TCTGTAGGCATAGAAATGTCTG------GTGCGCGTTGCAATTCAAGTTTTTTGAGATGG 530 |||||||||| ||||| || || |||| ||||| ||||| ||||| | |||||| Sbjct 6392595 TCTGTAGGCACAGAAACGTTTGTTTTCGGTGCACGTTGAAATTCGAGTTTGTCGAGATGT 6392536 Query 531 TCCATGACATCAGTAAAACTATTTGTGTCATTAAAAAATGATTTGATGGCTCTAAAATAA 590 || ||||| || || | | ||| || ||| | | || || ||| ||||| |||||| Sbjct 6392535 TCTATGACCACATCAAGAGT--TTG-GTTATTGAGTATTGGTTGGATCGCTCTGAAATAA 6392479 Query 591 GGCAGGATGGCTGAACTGTTGATGTTGTGTGGTGGCTGGGGGCTCA-CAGAAAAGCACTG 649 |||||||||||||| |||| || || |||||| || | |||| ||| ||| |||||| | Sbjct 6392478 GGCAGGATGGCTGAGCTGTCGAGGTAGTGTGG-GGGTCGGGGGTCAGCAGTGAAGCACGG 6392420 Query 650 CATGCGGCACGTGCATGATTTTACTAATCCCTTATTCTCTTTCTGCTTCTGTGG---AAG 706 ||| | || || ||||| | ||| ||||| | |||| ||| || ||| Sbjct 6392419 CATCTCGTACTGGCTGGATTTCGGCACTCC---TTTCTCGTCCTGCAGCTGGGGAACAAG 6392363 Query 707 GAGAGGAAATGGGTGAGCATTAGTGTTGTAAAGCAGTCAGAAACCC 752 ||| ||||||||||||||| ||| ||| || ||| |||||| || Sbjct 6392362 GAGTCGAAATGGGTGAGCATCAGTTTTGCGAAACAGCCAGAAATCC 6392317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 437042993550000