Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq103000 161 2e-34 seq83363 161 2e-34 seq182 145 1e-29 seq150 140 6e-28 seq260794 129 1e-24 seq299 127 4e-24 seq103970 114 3e-20 seq98 111 3e-19 seq191 98.7 2e-15 >seq103000 Length=415 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | ||| ||||| | ||| ||||| ||||||||||| ||||| |||||||| Sbjct 177 CCTCCTCGAAGACGGAGAACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATCAGAA 236 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| | || ||||| ||||||||||| | ||| ||||| || || Sbjct 237 AGAGTGCGTCCATCTTCCAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGATCCGGTGGG 296 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || |||||||||||||| || ||||||||||| || || | || || Sbjct 297 ATTCCTTCTTTGTCTTGAATCTTTGCCTTCACATTTTCAATGGTGTCGGAGGCCTCAACC 356 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || || || | || || ||||| |||||||| Sbjct 357 TCGAGTGTAATTGTTTTCCCGGTTAGGGTTTTCACAAAGATCTGCAT 403 Score = 129 bits (142), Expect = 1e-24 Identities = 126/160 (79%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 |||||||||||||| || || ||||| || |||| || |||||||| || ||||||||| Sbjct 18 CCGTCTTCTAGTTGCTTGCCGGCAAAAATAAGTCGCTGCTGATCTGGTGGGATTCCTTCC 77 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCTACTTCCAAAGT 82771 || |||||||| || ||||| ||||| || || || || | ||| || ||||| | ||| Sbjct 78 TTGTCTTGAATTTTGGCTTTCACATTCTCGATTGTGTC-TGAGGCCTCGACTTCAAGAGT 136 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || |||| ||||| ||||| ||||||||| Sbjct 137 GATTGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCATT 176 >seq83363 Length=456 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | ||| ||||| | || || || ||||| || || || || || ||||| Sbjct 399 CCTCCTCGGAGACGGAGAACAAGATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAG 340 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || |||||||| |||||||| || | || |||||||| || Sbjct 339 AGGGTACGTCCATCTTCAAGCTGTTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGA 280 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| |||||||| || || || ||||| || || |||||| | ||| ||| Sbjct 279 ATTCCTTCCTTGTCTTGAATTTTCGCCTTCACATTCTCGATTGTATCAGAGGCTTCCACT 220 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || ||||| || ||||| || ||||| || || ||||| Sbjct 219 TCCAAAGTGATGGTCTTCCCCGTCAAGGTTTTTACGAAAATTTGCAT 173 Score = 114 bits (126), Expect = 3e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | ||| || || | ||| || || || || || || || |||||||| || Sbjct 171 CCTCCTCGAAGACGGAGCACAAGGTGAAGGGTTGACTCCTTTTGAATGTTATAATCGGAG 112 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| ||||| ||||| || || || || | |||||||| || || Sbjct 111 AGTGTACGCCCATCTTCAAGTTGCTTTCCTGCGAAAATAAGACGCTGTTGATCAGGTGGA 52 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751 ||||||||||| || ||||| || ||||| ||||| ||||| |||||| Sbjct 51 ATTCCTTCCTTGTCCTGAATTTTCGCTTTCACATTCTCAATGGTATCA 4 >seq182 Length=3864254 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| |||||| || | ||||| || || || ||||| || || ||||| | Sbjct 2229629 TACCACCCCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGG 2229570 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || || || || ||||| || || || || || || | Sbjct 2229569 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGGG 2229510 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || ||||| || || || || || || || ||| | || || | Sbjct 2229509 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCA 2229450 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||| || || |||||||| ||||| ||||| || || ||||||||| Sbjct 2229449 CCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATT 2229400 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| || || | ||||| || || || ||||| || || |||||||| Sbjct 2229855 CCACCCCTCAGACGGAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 2229796 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || || || ||||| || || || || || ||||| Sbjct 2229795 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGG 2229736 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || || || || || || || | || || || Sbjct 2229735 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACC 2229676 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| |||| ||||| || || |||||||| Sbjct 2229675 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2229629 >seq150 Length=4498840 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| || | | | ||||||||||| || || || ||||| ||||| || || || Sbjct 34181 CCGCCTCACAGATGACGCACTAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGAC 34240 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || ||||| ||||| || |||| || || | || ||||| || || Sbjct 34241 AGAGTGCGGCCATCCTCTAGCTGTTTGCCCACAAAAATCAGACACTGCTGATCAGGTGGG 34300 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||| || || ||||| ||||| ||||| || ||| | || || || Sbjct 34301 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACC 34360 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| |||| ||||| ||||| |||||||| Sbjct 34361 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 34407 >seq260794 Length=213 Score = 129 bits (142), Expect = 1e-24 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||| |||||||| |||||||| || || ||||| || | | | | || Sbjct 44 CGGAGAACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAATCGGACAAAGTGCGTCCA 103 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| |||||||| ||||||||||| |||| || |||||||| || |||||||| || Sbjct 104 TCTTCGAGTTGTTTGCCAGCAAAGATCAGTCGCTGCTGATCTGGGGGGATTCCTTCTTTG 163 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751 || || ||||| || || || |||||||| || ||| Sbjct 164 TCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCA 199 >seq299 Length=1488728 Score = 127 bits (140), Expect = 4e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| || || ||||| || ||||||||||| ||||| ||||| || || || ||||| Sbjct 453101 ACCTCCCCTTAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGA 453160 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || ||||| ||||||||||| | || || || |||||| | Sbjct 453161 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGAAG 453220 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || || || ||||| ||| | | || |||||||| || || ||| | || || || Sbjct 453221 GATGCCCTCTTTTTCTTGGATCGTCCCCTTGACATTTTCGATGGTGTCACTGGGCTCCAC 453280 Query 82763 TTCCAAAGTTATCGTCTT 82780 |||| || || ||||| Sbjct 453281 CTCCAGGGTGATGGTCTT 453298 >seq103970 Length=412 Score = 114 bits (126), Expect = 3e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || | ||| ||||| || || ||||| || || ||||| || Sbjct 195 CCTCCACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAC 136 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| ||| || || || | ||| ||||| || ||||| || | || ||||| ||||| Sbjct 135 AGAGTTCGGCCATCCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGGG 76 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751 |||||||||||||| |||||||| || || ||||| || || || ||| Sbjct 75 ATTCCTTCCTTATCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCA 28 >seq98 Length=6767347 Score = 111 bits (122), Expect = 3e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| || ||||| ||||||||||| | || || || ||||| || || || || Sbjct 4449259 CCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCT 4449200 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || ||||| ||||| | || |||||||| || || ||| | || || || |||| || Sbjct 4449199 TTTTCTTGGATCTTCCCCTTGACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 4449140 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||| || ||||| ||||| || || ||||||||| Sbjct 4449139 ATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATT 4449101 >seq191 Length=3465010 Score = 98.7 bits (108), Expect = 2e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 60309 AAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATG 60368 |||||||||||||||| ||| |||||||||| |||||||| ||||||||| | || |||| Sbjct 1561496 AAGCATTTTTCGGAGCCCAGCTGAATTCCTTCATCCATGTGATTATGTATTCATACTATG 1561437 Query 60369 GTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTA 60428 | || | || | ||| || | || | |||||| | |||||||| || || || || | Sbjct 1561436 GGTTGACTGCCTTTGGCCCGTGGATTCAGAAGTATCTTTGGTGGAAACGATACCTGACCA 1561377 Query 60429 TAATGCA 60435 | |||| Sbjct 1561376 TGTTGCA 1561370 Score = 91.5 bits (100), Expect = 3e-13 Identities = 124/173 (72%), Gaps = 5/173 (3%) Strand=Plus/Minus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| |||||||| || || || || || || || ||||||||||| || ||| Sbjct 1562678 TGGTGGTACTTCATATCTAAGGGAATTGAGTATTTGGACACAGTGTTTTTCATCCTGAGG 1562619 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || || || || ||| | || ||||||||||| | ||| |||||||| || Sbjct 1562618 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACATTG 1562559 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA-----AGCATTTTTCGGA 60322 | ||| | || ||||| ||| | || || || || || |||||| ||| Sbjct 1562558 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACAGGGTGAGTATTTTTAGGA 1562506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 978346093309775