Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq191 104 4e-17 >seq191 Length=3465010 Score = 104 bits (114), Expect = 4e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 58385 TGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATACTTAGG 58444 |||||||||| |||||||| || || || || || || |||||||||||||| || ||| Sbjct 1562678 TGGTGGTACTTCATATCTAAGGGAATTGAGTATTTGGACACAGTGTTTTTCATCCTGAGG 1562619 Query 58445 AAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTTACTTTA 58504 || || || || || || || || ||||||||||| | ||| |||||||| || Sbjct 1562618 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACATTG 1562559 Query 58505 GGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAGG 58541 | ||| | || ||||| ||| | ||||| || |||| Sbjct 1562558 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACAGG 1562522 Score = 84.2 bits (92), Expect = 4e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 ||||||||||| || ||| ||||||| || |||||||| ||||||||| || ||||| Sbjct 1561494 GCATTTTTCGGAGCCCAGCTGAATTCCTTCATCCATGTGATTATGTATTCATACTATGGG 1561435 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 || | || | ||| | | || | |||||| | |||||||| || ||||| || || Sbjct 1561434 TTGACTGCCTTTGGCCCGTGGATTCAGAAGTATCTTTGGTGGAAACGATACCTGACCATG 1561375 Query 58661 ATGCAATTGGT 58671 |||| |||| Sbjct 1561374 TTGCAGCTGGT 1561364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 900286244196000