Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq182 150 2e-31 seq180 113 4e-20 seq312 102 8e-17 seq103000 100 3e-16 seq24 93.3 4e-14 seq39 87.8 2e-12 seq83363 84.2 2e-11 >seq182 Length=3864254 Score = 150 bits (166), Expect = 2e-31 Identities = 158/205 (77%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || |||||||| | ||| | | | || || |||| Sbjct 2229832 ATGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCT 2229774 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | ||||||| ||||||||| ||||||||||||||||| || ||||| Sbjct 2229773 GCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCT 2229714 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||| | |||||| |||||||||| || | ||||| ||| ||||||| Sbjct 2229713 TGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGG 2229654 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || ||||| |||||||| Sbjct 2229653 TCAGGGTCTTCACGAAGATCTGCAT 2229629 Score = 138 bits (152), Expect = 1e-27 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||||||| | ||| | | | || || |||| Sbjct 2229604 ATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCA-TCTTCCAGCT 2229546 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | ||||||| ||||||||| || |||||||||||||| || ||||| Sbjct 2229545 GCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCT 2229486 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||| | ||||| |||||||||| || | ||||| ||| ||||| | Sbjct 2229485 TGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCG 2229426 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || ||||| |||||||| Sbjct 2229425 TCAAGGTCTTCACGAAGATCTGCAT 2229401 >seq180 Length=3735678 Score = 113 bits (124), Expect = 4e-20 Identities = 148/200 (74%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| | || ||| || || ||| | | | ||||| ||||| || | Sbjct 1580299 GGTGGACTCTTTCTGAACATCGTAGTCTGACAGAGTGCGGCCA-TCCTCCAGCTGTTTCC 1580357 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 ||| | |||| || |||||||||| || | |||| | |||||||| ||| ||| ||| Sbjct 1580358 CCGTGAAAATCAGATGCTGCTGGTCAGGTGAGATGACCTCCTTGTCTTAGAT-TTTAGCT 1580416 Query 133582 T-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 | || | || | | ||||| |||| ||| || |||| ||||| ||| | ||| ||| | Sbjct 1580417 TTGACATTCTTATCAGTGTCAGTGGACTCAACCTCGAGGGTGATGGTCTGGCCCGTCGGG 1580476 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || ||||||||||| Sbjct 1580477 GTCTTCACAAAAATCTGCAT 1580496 >seq312 Length=1320911 Score = 102 bits (112), Expect = 8e-17 Identities = 119/157 (76%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| ||||| |||||| | |||| || ||||||||||| || |||||||| ||||| Sbjct 1167224 GTCCTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 1167283 Query 133565 GTCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 ||| || ||| || |||| | |||| ||||| ||||||| || | || ||||| Sbjct 1167284 GTC-TTGGGTTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCT-GAGGGTGA 1167341 Query 133624 CGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| ||||| || || || || |||||||| Sbjct 1167342 TGGCCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1167378 >seq103000 Length=415 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || |||||||| ||||||||||| | ||| | | | || || | |||||| || Sbjct 207 GTTGATTCTTTCTGGATATTGTAATCAGAAAGAGTGCGTCCA-TCTTCCAACTGCTTTCC 265 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || ||||| ||||| || || ||||| ||||| ||||| |||||| ||| Sbjct 266 GGCAAAGATTAGCCGTTGCTGATCCGGTGGGATTCCTTCTTTGTCTTGAATCTTTGCCTT 325 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||||| || ||| || |||| || | ||||| ||||| || || Sbjct 326 CACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGTGTAATTGTTTTCCCGGTTAGGGT 385 Query 133643 TTTTACGAAAATCTGCATG 133661 ||| || || ||||||||| Sbjct 386 TTTCACAAAGATCTGCATG 404 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || || |||||||| || |||| || |||||||| || || ||||| |||||||| Sbjct 20 GTCTTCTAGTTGCTTGCCGGCAAAAATAAGTCGCTGCTGATCTGGTGGGATTCCTTCCTT 79 Query 133565 GTCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 ||| ||| ||| || || | | ||| | ||||| | || ||| || || | |||| Sbjct 80 GTC-TTGAATTTTGGCTTTCACATTCTCGATTGTGTCTGAGGCCTCGACTTCAAGAGTGA 138 Query 133624 CGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || |||||||| || || || |||||||| Sbjct 139 TTGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCAT 175 >seq24 Length=14023012 Score = 93.3 bits (102), Expect = 4e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||| | ||||||| || | || ||||||||||| || |||||||| || ||| Sbjct 9383778 TCATCCAGCTGTTCGCCCGCGAAACTCAGACGCTGCTGGTCAGGTGGGATGCCCTCTTTG 9383837 Query 133566 TCGGTGATCTTTTGCT-TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || |||| ||| ||| ||| | |||| ||||| |||||| || |||| ||||| Sbjct 9383838 TCTTTGAT-TTTAGCTCTGACATTCTCAGTGGTGTCACAGGGCTCAACCTCGAGGGTGAG 9383896 Query 133625 GGTTTTGCCGGTCAG 133639 ||| ||||| ||||| Sbjct 9383897 GGTCTTGCCCGTCAG 9383911 >seq39 Length=12483156 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 |||||||| || || | |||||| ||||||||||||||| |||| ||||| |||||| Sbjct 4311932 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGATTG 4311873 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||| | || || | || ||||| ||||||||||| Sbjct 4311872 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGG 4311835 >seq83363 Length=456 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||| || || || | ||||| |||||||| || || || || ||||||||| Sbjct 327 TCTTCAAGCTGTTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTG 268 Query 133566 TCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||| || || | | ||| | || || | || ||||| || | |||| Sbjct 267 TCT-TGAATTTTCGCCTTCACATTCTCGATTGTATCAGAGGCTTCCACTTCCAAAGTGAT 209 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 ||| || || |||| |||||||||||||| |||||| || Sbjct 208 GGTCTTCCCCGTCAAGGTTTTTACGAAAATTTGCATGCCT 169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481748617239000