Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq96 279 6e-70 seq72 194 2e-44 >seq96 Length=6608501 Score = 279 bits (308), Expect = 6e-70 Identities = 670/1005 (67%), Gaps = 18/1005 (2%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| || |||| |||||| | |||||||| || || | |||| || Sbjct 981459 CCAGGGCTTTATGCCGCAGATGCTCGTCCAAACACTGGATGGCAAAGAAGTCTATGTCTG 981518 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || |||||||| ||| || | || |||| || | || || | Sbjct 981519 TGTCAAACTTATTGGCAAACAGGTGGTGCACGTGCAGCA---TCCAGTTTAAGTCACCAG 981575 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| || || || || |||||||| | ||||||||||||||| || |||| || | Sbjct 981576 CTCCGAAAACACATACAGAGCGCACGTGGATGCCGCTGCACGGCGGGTAGGGGGCGCCCT 981635 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | ||||| || || |||| ||||||||||| ||||| | |||| |||||||| | Sbjct 981636 TGGAAACATCACCTTCAAAGTACTGCCACTTAACAAACCTGGCAATAGAGTGCATGTCTG 981695 Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | |||||||||| | ||| | || || | || || || | |||| ||||| | | Sbjct 981696 ACATGTCGTACTTAGA-ACTTAAGGACAGTGAGCCCGGGACTTCAGGCATCCTCTGAATA 981754 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | |||||||| || || || || || | ||||||||| |||| || | Sbjct 981755 GTGGCCCAGAGATACTCGTCTGGGCTGTATGTATCTTTTGCCCACTCCATAAACTTCCGG 981814 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | ||| || | || | || || || ||| | || | ||| || ||||| Sbjct 981815 ATTTTTTCATTCTCAAGCACATAGCCCACATACTCCCTACTGACCACAAAATAGGCGCTG 981874 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || ||||||| || | | |||||| | |||||| ||| |||| | | Sbjct 981875 CCTGAAAACAGCGGCGTTTCAAGAGGAGGATGTATTTTGTCAGTCCCCATGTTTGTCAGC 981934 Query 162538 ATTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGACGG 162593 |||| | || || ||| | ||| ||||||| | | ||| || | | Sbjct 981935 TTTCCATTAACTAC----TGTATAGTGCTTTTTCCACCTTTCTTTTTTATGGGCGGGCAT 981990 Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653 | || || ||||| |||| ||| || | ||| |||| | || || || || Sbjct 981991 TTTCTCCGTTTCTAGGTTGTTCTCGCCCATTAACGACTTGAGCTTCCTGACAATTTCCAG 982050 Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713 ||||| |||| ||||| || | ||||||||||| || | || ||||| | | | Sbjct 982051 GTTGGTTTTAATCGGAAAATCCATACCGCAGAGATTGATCAAGTACTTCCAGTCCGCATT 982110 Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 | | ||| || ||||| | ||||| || || ||||| || || |||||||| || || Sbjct 982111 CATTTTGTAGAGGTCCTGCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGAGGCATA 982170 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 ||| || ||||||| |||| ||||| || || |||||| || | || || || Sbjct 982171 CACCACACTCTCCAGTTGCCTGGCCACAAAAACGTTACTGAAACAAGACGCAATGCCAAT 982230 Query 162834 CACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 ||| | ||| | || || || | ||| | || ||||| | |||||| | |||| Sbjct 982231 CACTG-CAGCCAAAAAGGAT-TCCTCGGATTTTTTGTCCACGTGAATGCAGTAGAAATTC 982288 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| |||||||||||||| | || |||| ||| || || || || || ||||| Sbjct 982289 TGAGGCATATAGATGGCCCTCAG-AGCCTGTCGAGCATTTCGATTTTGTGATGAACCACT 982347 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTG 163011 || ||||| ||||| || ||||| ||||| || ||| || | || || ||| ||| Sbjct 982348 ATGGAATATGCTATTGGAAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATGTATTTG 982407 Query 163012 CGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 || | | | | || | | ||| || |||||||| |||||| Sbjct 982408 CGCTTCTTGATGAAAGAAGTACAATCACTGGTCATGTTGACGTAG 982452 >seq72 Length=8065517 Score = 194 bits (214), Expect = 2e-44 Identities = 236/322 (73%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| || || || || || || ||||| ||||| || | | Sbjct 2533 CAGAGAGGGTGAGGCAGGCTACTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGC 2474 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| || || ||||||| |||||| ||||| || || | || || || ||| Sbjct 2473 ACTTGTAACACCCCTCATCCTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 2414 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | |||||| || | ||||||||| ||||| || || | Sbjct 2413 GTCCCAGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGT 2354 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||||| ||| ||||||||| || || |||||| || || ||||| || || | Sbjct 2353 TCTCGCTGAAGGTGATCATGTTTTCCGGACTTACAGCCTTGATTTTTTGCCATGTCACAA 2294 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||||| | |||| |||||||| |||||||||||||||||||||| | Sbjct 2293 TCAAGACTTCTTGGGGATTTTGCAGAGAGCAGCTTAAAGAAGCAGGTGTGTTCAGCGGCT 2234 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| | || || || ||||| Sbjct 2233 CTCTTACATCCTGGGTCACCAC 2212 Score = 114 bits (126), Expect = 1e-20 Identities = 162/226 (72%), Gaps = 9/226 (4%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 || |||| ||| || || |||||||||| || | || | ||| |||||||||| Sbjct 5119 ACCGTTTCCCTGTAGTTGGTCACAGTCCCCAGGTACAGCACCTGGCAGATCACCTCCT-- 5062 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| ||||| || || ||||| || || || ||||| || |||||||| ||||| Sbjct 5061 -TCCCCACCTGACTCTTGGGGTCTTTGACCTGGAGGATGCTGGTGACAGATGTTGTCCCA 5003 Query 171623 TTACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679 || | ||| |||| | | |||||| || || || || || || | || ||||| Sbjct 5002 TTGGGGTGTGAGAGAA---TCTCAGTACTGTTCTCAATCCCCGACCCAGAGACCTTCCAG 4946 Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 | || ||||| ||||| | |||| | ||||||||||| || |||| Sbjct 4945 GAGATCACAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 4900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576431167560000