Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq103000 105 4e-18 seq83363 105 4e-18 seq260794 93.3 3e-14 seq103970 82.4 5e-11 seq182 82.4 5e-11 >seq103000 Length=415 Score = 105 bits (116), Expect = 4e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| || || |||||||| || || |||||| | || ||||| || ||||||||||| Sbjct 213 TCTTTCTGGATATTGTAATCAGAAAGAGTGCGTCCATCTTCCAACTGCTTTCCGGCAAAG 272 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | || |||||||| | || | ||||||||||| ||| || || | |||| Sbjct 273 ATTAGCCGTTGCTGATCCGGTGGGATTCCTTCTTTGTCTTGAATCTT-TGCCTTCACATT 331 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||||||| | || || || | || || ||||| || |||| ||||| || Sbjct 332 TTCAATGGTGTCGGAGGCCTCAACCTCGAGTGTAATTGTTTTCCCGGTTAGGGTTTTCAC 391 Query 33738 AAAGATCTGCAT 33749 |||||||||||| Sbjct 392 AAAGATCTGCAT 403 Score = 86.0 bits (94), Expect = 4e-12 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 33577 TCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCT 33636 ||||| || || || |||| || | ||| || ||||||||||| | |||||||||||| Sbjct 3 TCGGAAAGGGTACGGCCGTCTTCTAGTTGCTTGCCGGCAAAAATAAGTCGCTGCTGATCT 62 Query 33637 TGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA 33695 | || | ||||| ||||| |||||| |||| |||| || | ||||| | Sbjct 63 GGTGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTC-ACATTCTCGATTGTGTCTGAGGC 121 Query 33696 TTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || |||| ||||| ||||| || || | || || |||||||||||||| Sbjct 122 CTCGACTTCAAGAGTGATTGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCAT 175 >seq83363 Length=456 Score = 105 bits (116), Expect = 4e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || ||||| |||||||| || ||||| || ||| | || || | |||||||||||||| Sbjct 363 TCCTTTTGGATGTTGTAGTCAGAGAGGGTACGTCCATCTTCAAGCTGTTTTCCGGCAAAG 304 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | ||||||||||||| | || | ||||| ||||| ||||||| ||| |||| Sbjct 303 ATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGAATTTTCGCCTTC-ACATT 245 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | || || | |||||| || | ||||| || || || || || |||||||| Sbjct 244 CTCGATTGTATCAGAGGCTTCCACTTCCAAAGTGATGGTCTTCCCCGTCAAGGTTTTTAC 185 Query 33738 AAAGATCTGCAT 33749 || || ||||| Sbjct 184 GAAAATTTGCAT 173 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| ||||| ||||| |||||||||||||| || | || || | ||| ||||| || || Sbjct 136 CTCCTTTTGAATGTTATAATCGGAGAGTGTACGCCCATCTTCAAGTTGCTTTCCTGCGAA 77 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCA 33673 ||| | |||||| ||||| | || | ||||| ||||| ||||||| ||||| Sbjct 76 AATAAGACGCTGTTGATCAGGTGGAATTCCTTCCTTGTCCTGAATTTTCGCTTTCA 21 >seq260794 Length=213 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || ||||| |||||| || |||||||||||||| | |||||| | || || Sbjct 50 ACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATCTTCG 109 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 | |||||| || ||||| |||| |||||||||||| | || | ||||||||||| Sbjct 110 AGTTGTTTGCCAGCAAAGATCAGTCGCTGCTGATCTGGGGGGATTCCTTCTTTGTC 165 >seq103970 Length=412 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||| | || |||||| ||| || || |||||||||||||| || || || | Sbjct 184 ACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGAGTTCGGCC 125 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || |||||||| |||||||| || || | |||||||||||| | || | ||||| || Sbjct 124 ATCCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGGGATTCCTTCCTT 65 Query 33654 GTC 33656 || Sbjct 64 ATC 62 >seq182 Length=3864254 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||| ||| | |||| ||| || || ||| || || |||||||||||||| Sbjct 2229628 ACCACCCCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGGA 2229569 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || || || || | | |||||| || | || Sbjct 2229568 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGGGG 2229509 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || || || ||| || | || | |||||| || | |||| Sbjct 2229508 GATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCTCCA 2229450 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || || || || || ||||||||||| Sbjct 2229449 CCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2229401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327595417512000