Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq103000 143 6e-29 seq103970 120 7e-22 seq260794 107 5e-18 seq83363 104 5e-17 seq182 86.0 1e-11 >seq103000 Length=415 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || ||||| || || | || || || || ||| Sbjct 400 CAGATCTTTGTGAAAACCCTAACCGGGAAAACAATTACACTCGAGGTTGAGGCCTCCGAC 341 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| |||||||||||| ||||||||||| ||||| ||| Sbjct 340 ACCATTGAAAATGTGAAGGCAAAGATTCAAGACAAAGAAGGAATCCCACCGGATCAGCAA 281 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| |||||||||||||||||||||||| | ||| | | |||||||| || Sbjct 280 CGGCTAATCTTTGCCGGAAAGCAGTTGGAAGATGGACGCACTCTTTCTGATTACAATATC 221 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||| || ||||||||||||||| | | |||||| Sbjct 220 CAGAAAGAATCAACTCTTCACCTTGTTCTCCGTCTTCGA 182 Score = 111 bits (122), Expect = 4e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 |||||| | | ||||||||||||||| || |||||||||| ||| || |||| | ||| Sbjct 182 TCGAAGACGGAGAACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATCAGAAAGAGT 241 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||| |||||||||||| ||||| |||||||| ||| Sbjct 242 GCGTCCATCTTCCAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGA 287 >seq103970 Length=412 Score = 120 bits (132), Expect = 7e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 206203 ACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAA 206262 || |||||| | || || || |||||||| |||| || ||| |||||||| Sbjct 2 ACCATCACTCTCGAGGTTGAGGCCTCTGACACCATCGAGAATGTGAAGGCCAAGATTCAG 61 Query 206263 GAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAA 206322 || || |||||||| || || || | |||||||||||||||||||| ||||| Sbjct 62 GATAAGGAAGGAATCCCTCCTGATCAGCAGCGTCTTATCTTCGCCGGAAAGCAATTGGAG 121 Query 206323 GATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| | ||| || ||||||||||| ||||||| ||||| |||||||||||||| Sbjct 122 GATGGCCGAACTCTGTCCGATTACAACATCCAGAAGGAGTCCACTCTTCACCTTGT 177 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||||||||| ||||| ||||||| || || || | || ||| | ||||| ||| Sbjct 177 ACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGAGTTCGGCCATCCTCC 118 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||||||||||| || || ||| Sbjct 117 AATTGCTTTCCGGCGAAGATAAGACGCTGCTGA 85 >seq260794 Length=213 Score = 107 bits (118), Expect = 5e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 206227 TCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGAC 206286 |||||||| | ||| || ||| ||||| || || ||||||||||| || || Sbjct 201 TCTGACACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGAT 142 Query 206287 GCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTAC 206346 || |||| ||||| || || || || | ||||||||| | |||||| |||||||| Sbjct 141 CAGCAGCGACTGATCTTTGCTGGCAAACAACTCGAAGATGGACGCACTTTGTCCGATTAC 82 Query 206347 AACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| ||||||||||||||||||| ||||| ||| | |||| || Sbjct 81 AACATCCAGAAAGAGTCTACTCTCCACCTGGTTCTCCGACTACG 38 >seq83363 Length=456 Score = 104 bits (114), Expect = 5e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || || || |||||||||||||||||| ||||| ||| |||| Sbjct 188 AAAACCTTGACGGGGAAGACCATCACTTTGGAAGTGGAAGCCTCTGATACAATCGAGAAT 247 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || |||||||| || ||||||||| || || || | || ||||| Sbjct 248 GTGAAGGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAGCAGCGTCTCATCTTT 307 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||| ||| | ||||||||| | || | | || |||||| |||| || || || Sbjct 308 GCCGGAAAACAGCTTGAAGATGGACGTACCCTCTCTGACTACAACATCCAAAAGGAATCA 367 Query 206365 ACTCTTCACCTTGTT 206379 || || || |||||| Sbjct 368 ACCCTCCATCTTGTT 382 >seq182 Length=3864254 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| |||| ||||| |||||| |||| || ||| Sbjct 2229425 ACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTGAAGGCC 2229484 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| || || ||| || || || |||||||| || ||| Sbjct 2229485 AAGATCCAGGATAAGGAAGGCATCCCCCCTGACCAGCAGAGGCTCATCTTCGCAGGCAAG 2229544 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | ||| | ||||||||||| ||||||| ||||| || || || Sbjct 2229545 CAGCTGGAAGATGGCCGCACTCTTTCCGATTACAACATCCAGAAGGAGTCGACCCTGCAT 2229604 Query 206374 CTTGT 206378 || || Sbjct 2229605 CTGGT 2229609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177630608188725