Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq83363 116 4e-21 seq39 96.9 3e-15 seq131755 82.4 7e-11 seq131535 82.4 7e-11 >seq83363 Length=456 Score = 116 bits (128), Expect = 4e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||| | | |||| || ||||| ||||||||||| | |||||| |||||| Sbjct 382 AACAAGATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGTCCATCTTC 323 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||||| |||| | |||| |||||||| |||||||| || || ||||| || || Sbjct 322 AAGCTGTTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTG 263 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| |||| | || | ||||| | | |||||||| | || | || || Sbjct 262 AATTTTCGCCTTCACATTCTCGATTGTATCAGAGGCTTCCACTTCCAAAGTGATGGTCTT 203 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || |||| ||||||| |||||| |||||| || Sbjct 202 CCCCGTCAAGGTTTTTACGAAAATTTGCATGCCT 169 >seq39 Length=12483156 Score = 96.9 bits (106), Expect = 3e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| || ||||| | |||||||||||||||||| || ||||| || ||||||||| Sbjct 4311932 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGATTG 4311873 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 147615 || |||||||| || | |||||| ||||||||||||| || |||||| Sbjct 4311872 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCG 4311822 >seq131755 Length=364 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 47196 AATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAA 47255 ||||| ||||| |||||| | |||||||| | ||||| ||||| ||||| || |||||| Sbjct 172 AATCCCTTTGATTTTATGGAAAACATTTCTTTAGAGGGGAAAACAAATTTCTTTGAGAAA 231 Query 47256 CGAGTCGGAGAGTATAAGCGCTT 47278 ||||| ||||||| ||||||| Sbjct 232 CGAGTTTCAGAGTATCAGCGCTT 254 >seq131535 Length=364 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 47196 AATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAA 47255 ||||| ||||| |||||| | |||||||| | ||||| ||||| ||||| || |||||| Sbjct 193 AATCCCTTTGATTTTATGGAAAACATTTCTTTAGAGGGGAAAACAAATTTCTTTGAGAAA 134 Query 47256 CGAGTCGGAGAGTATAAGCGCTT 47278 ||||| ||||||| ||||||| Sbjct 133 CGAGTTTCAGAGTATCAGCGCTT 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474962572071000