Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq240 134 1e-26 seq4 116 3e-21 seq131755 86.0 5e-12 seq131535 86.0 5e-12 seq140 82.4 6e-11 >seq240 Length=2402814 Score = 134 bits (148), Expect = 1e-26 Identities = 275/409 (67%), Gaps = 0/409 (0%) Strand=Plus/Plus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 ||| ||||| || || ||||| || ||||||| | | |||||||| || |||| | Sbjct 1019887 AGGAGATCTAGGCCCGGTTTACGGCTTTCAGTGGAGGCATTTTGGGGCCGAATACAAAGA 1019946 Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGAT 40984 |||| | || |||||| | ||||| | || || | ||| || | || || || Sbjct 1019947 TATGGATTCAGATTATTCAGGCGAAGGAGTAGACCAGCTGCAGAAGGTGACTGACACAAT 1020006 Query 40985 TAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACA 41044 ||| || | || || | || | || |||| || ||||| |||| || | Sbjct 1020007 CAAAACCAACCCTAATGACAGAATCGTCATCATGTGTGCCTGGAATCCAAAAGATCTCGC 1020066 Query 41045 TTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACT 41104 | | ||| | ||||| || | | | || ||||| ||||| || ||||| || Sbjct 1020067 GCTCACGGCCCTCCCACCCTGCCCTGCCCTTTGCCAGTTCTACGTGGTGAACGGTGAGCT 1020126 Query 41105 GTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 ||| || || |||| | | || || |||||||| || || | || || ||||| || Sbjct 1020127 GTCCTGCCAGCTGTACGAGTGGTCGGGAGACATGGGCCTGGGCATGCCCTTCAACATCGC 1020186 Query 41165 GAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATT 41224 || || | |||||||| || |||||||||||| | || | || || ||||| || Sbjct 1020187 CAGCTACTCCCTGCTCACCTACATGATTGCACACATCACAGGCCTGAAGCCAGGTGACTT 1020246 Query 41225 TGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCG 41273 ||| ||||| || ||||||| || |||||||| |||||||| |||||| Sbjct 1020247 TGTACACACTTTGGGAGATGCCCACATTTACATGAATCACATTGAGCCG 1020295 >seq4 Length=22931326 Score = 116 bits (128), Expect = 3e-21 Identities = 98/118 (83%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||| ||||||| || ||||| ||||| || |||||||| Sbjct 4285394 CGGTTTAGCCAAGAAGTTCAGATTA-CAGAAGCCCGTTGTTTCTATGGCTTCCAAATTGC 4285452 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || ||||| ||||| |||||| Sbjct 4285453 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGATACCTACATTAAAGAT 4285510 Score = 111 bits (122), Expect = 1e-19 Identities = 97/118 (82%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||| ||||||| || ||||| ||||| || |||||||| Sbjct 4284618 CGGTTTAGCCAAGAAGTTCAGATTA-CAGAAGCCCGTTGTTTCTATGGCTTCCAAATTGC 4284676 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 4284677 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACCTACATTAAAGAT 4284734 >seq131755 Length=364 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| | Sbjct 170 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAGGGGAAAACAAATTTCTTTGAGA 229 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 230 AACGAGTTTCAGAGTATCAGCG 251 >seq131535 Length=364 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| | Sbjct 195 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAGGGGAAAACAAATTTCTTTGAGA 136 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 135 AACGAGTTTCAGAGTATCAGCG 114 >seq140 Length=4768286 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 77433 CACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCT 77492 ||||||||||||||||||||||||||||||||| ||||||||| |||| | | ||| Sbjct 4697748 CACCATTGATGGTGAACATGCTGTCTGTGTAGAGGACCAGCTTGCTGATGCTCTGAGCCT 4697807 Query 77493 GAGCTTGTTGCAGTGCTTTGGATGCAGCCTGGA 77525 || || || | |||||| | || ||||||| Sbjct 4697808 TTGCCTGCTGGATGGCTTTGCAGGCTGCCTGGA 4697840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396115545483625