Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq103000 95.1 1e-14 seq150 89.7 4e-13 seq39 87.8 2e-12 >seq103000 Length=415 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 ||||||| || || || ||||| |||| || ||||| ||||| || || | || || | Sbjct 19 CGTCTTCTAGTTGCTTGCCGGCAAAAATAAGTCGCTGCTGATCTGGTGGGATTCCTTCCT 78 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 | || || ||| ||||| | || | ||||||| ||| || ||||| ||||| | Sbjct 79 TGTCTTGAATTTTGGCTTTCACATTCTCGATTGTGTCTGAGGCCTCGACTTCAAGAGTGA 138 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | | ||| || |||||||| ||||||||||| ||||| Sbjct 139 TTGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCAT 175 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || |||||||| || | |||| | ||||| | ||| || ||| Sbjct 207 GTTGATTCTTTCTGGATATTGTAATCAGAAAGAGTGCGTCCATCTTCCAACTGCTTTCCG 266 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || || || |||||||| || | || ||||| || ||||| ||| Sbjct 267 GCAAAGATTAGCCGTTGCTGATCCGGTGGGATTCCTTCTTTGTCTTGAATCTTTGCCTTC 326 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | ||||| | ||| ||||| || || || || | ||| || || || ||| Sbjct 327 ACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGTGTAATTGTTTTCCCGGTTAGGGTT 386 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 387 TTCACAAAGATCTGCAT 403 >seq150 Length=4498840 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || |||||||||||||| || |||| | || || |||||||| || Sbjct 34211 GTGGACTCCTTCTGAATATTGTAGTCTGACAGAGTGCGGCCATCCTCTAGCTGTTTGCCC 34270 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 | |||| |||| ||| ||||| || || | ||||| || || ||| || ||| Sbjct 34271 ACAAAAATCAGACACTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGGATTTTAGCTTTG 34330 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| ||| ||||| || || || || | ||||||||||| || Sbjct 34331 ACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTC 34390 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 34391 TTCACAAAGATCTGCAT 34407 >seq39 Length=12483156 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 131030 GCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTT 131089 |||||||| ||| |||||||| ||||| |||||||||||||| ||||| ||||| Sbjct 4315112 GCCAGGTCACAGCTGGCTTCCAAGGCTCCATAATAAATGGTTTCAAAGATTTGCTTATTC 4315053 Query 131090 AATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGA 131149 ||| | || | ||||| |||| || |||| | ||||||||| ||||| ||| Sbjct 4315052 AATAACTGGGCCTCCGGACTCTCAAAAGGGTATCTCATCAGAATAAAAGCATCTGCCAGA 4314993 Query 131150 CCCTGTATCCCAA 131162 || |||| ||||| Sbjct 4314992 CCTTGTACCCCAA 4314980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423501272218200