Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq240 149 5e-31 >seq240 Length=2402814 Score = 149 bits (164), Expect = 5e-31 Identities = 483/738 (65%), Gaps = 24/738 (3%) Strand=Plus/Minus Query 111564 AATAGCAACATCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAAT-TCAAAGTCAT 111622 |||||| | ||||| || |||| |||||||| | || || |||| | |||||| | Sbjct 1020442 AATAGCCATTTCCATTTTAATAGTCGGATGAGGATTGTAGC-CTTCAATCTGAAAGTCTT 1020384 Query 111623 CAGCAACAAAATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGGG 111682 |||| || || ||||| ||||| || | ||||| || || | || || Sbjct 1020383 CAGCCTTGAAGTCATCAATTTTCTCAACTTTTTGAAGGATTTTGAGCTTCAGGAAAGGCC 1020324 Query 111683 TAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCAT 111742 | || | ||| |||||| | || | |||| |||||||| | |||| || |||| Sbjct 1020323 TTGGTTCTCGCTGAAGCTGCATTTTCAGCGGCTCAATGTGATTCATGTAAATGTGGGCAT 1020264 Query 111743 CTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTATG 111802 |||| | | || | || || | |||| || || |||||||||||||||||||| | Sbjct 1020263 CTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGTAGG 1020204 Query 111803 TGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTT 111862 |||| || ||| || || ||||| || |||| || |||||||| |||||||| | | Sbjct 1020203 TGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCATGCCCAGGCCCATGTCTCCCGACCACT 1020144 Query 111863 GATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAAG 111922 || ||||| || || || | | | ||| || || || ||||| || | || | Sbjct 1020143 CGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCAGGGCAGG 1020084 Query 111923 GAGGCAATGCCAT----CCCATTCATAAAGGGTCCCCATGCACACATGATCATCCTTCTG 111978 | || | ||| | | | | || | ||| ||||||||||| | ||||| Sbjct 1020083 GTGGGAGGGCCGTGAGCGCGAGATCTTTTGGAT-TCCAGGCACACATGATGACGATTCTG 1020025 Query 111979 -CTGTAGCGATTATGTTCAATGTCGTGTATGACATTCAAGAGCTGGTCTATCCCTTTACC 112037 | ||| | | | || | ||| || | || ||| |||||||||| |||| || Sbjct 1020024 TCATTAGGGTTGGTTTTGATTGT-GTCAGTCACCTTCTGCAGCTGGTCTACTCCTTCGCC 1019966 Query 112038 AGTATAATCCGCCTGACATCCA-----GTGTATGTTGCCCCATAGTGTCTCCATTGGAAT 112092 | ||||| |||| ||||| ||||| |||||| | || ||||| || || Sbjct 1019965 TGAATAAT----CTGA-ATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAG 1019911 Query 112093 CCATAAATAGGCCCCAGATCTCCCGGGGCTGTATCTGGA-AATTGCTCTCTATTCAACAA 112151 || |||| || || |||||||| ||| | |||| ||| | || | ||| || Sbjct 1019910 CCGTAAACCGGGCCTAGATCTCC---TGCTCT-GGTGGAGAATCCCAGGCTGTCCAAGAA 1019855 Query 112152 ATCACTTCTAATATGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATT 112211 || | | | | ||| || |||||||| || || || | ||| | || || Sbjct 1019854 GTCTCGGGACCCACTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTT 1019795 Query 112212 TGTGGATCCTCTAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTT 112271 ||||||||| | |||||||| |||||| | |||| ||| ||| |||| | || | ||| Sbjct 1019794 TGTGGATCCCTTGATAAACCACAGCAATCCCTCCAAAACATCTTCCCAGAAAACACGTTT 1019735 Query 112272 AGTAGTTAGCAGTGGAAA 112289 || || ||||||||||| Sbjct 1019734 GGTTGTGAGCAGTGGAAA 1019717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 390623729781175