Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq150 156 5e-33 seq83363 154 2e-32 seq103970 141 1e-28 seq584 134 2e-26 seq182 134 2e-26 seq312 114 1e-20 seq299 109 6e-19 seq180 104 3e-17 seq15 98.7 1e-15 seq98 96.9 4e-15 seq24 96.9 4e-15 seq284 87.8 2e-12 seq189 86.0 7e-12 >seq150 Length=4498840 Score = 156 bits (172), Expect = 5e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||||||| | || Sbjct 34407 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 34348 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | || |||||||| || ||||||||||| || || || || ||| Sbjct 34347 GACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGATCAG 34288 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| |||| ||||||| || || || || ||||||| || || || ||||||| ||| Sbjct 34287 CAGTGTCTGATTTTTGTGGGCAAACAGCTAGAGGATGGCCGCACTCTGTCAGACTACAAT 34228 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | || ||||| ||||| || || |||| Sbjct 34227 ATTCAGAAGGAGTCCACCCTGCACTTAGT 34199 >seq83363 Length=456 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || | || || ||||| || ||| | || || || | | Sbjct 173 ATGCAAATTTTCGTAAAAACCTTGACGGGGAAGACCATCACTTTGGAAGTGGAAGCCTCT 232 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||||| |||||||| |||||||| |||||||| ||||| ||| Sbjct 233 GATACAATCGAGAATGTGAAGGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAG 292 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || || || || || |||| |||||||| | ||||| || Sbjct 293 CAGCGTCTCATCTTTGCCGGAAAACAGCTTGAAGATGGACGTACCCTCTCTGACTACAAC 352 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||||||||||| || || ||||| || | ||||| || || ||| Sbjct 353 ATCCAAAAGGAATCAACCCTCCATCTTGTTCTCCGTCTCCGAGGAGGA 400 Score = 136 bits (150), Expect = 4e-27 Identities = 131/168 (78%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| ||| |||| || ||||||||||||||||| |||||||| || || || Sbjct 4 TGATACCATTGAGAATGTGAAAGCGAAAATTCAGGACAAGGAAGGAATTCCACCTGATCA 63 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||||| ||||| || || |||||||| || |||| ||||| || | || ||||| Sbjct 64 ACAGCGTCTTATTTTCGCAGGAAAGCAACTTGAAGATGGGCGTACACTCTCCGATTATAA 123 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || || ||||| || || | |||||||| || || Sbjct 124 CATTCAAAAGGAGTCAACCCTTCACCTTGTGCTCCGTCTTCGAGGAGG 171 >seq103970 Length=412 Score = 141 bits (156), Expect = 1e-28 Identities = 149/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 27438 GACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCA 27497 ||| || ||||| ||||||||| | ||| | ||| | ||| ||||||| || ||||| Sbjct 1 GACCATCACTCTCGAGGTTGAGGCCTCTGACACCATCGAGAATGTGAAGGCCAAGATTCA 60 Query 27498 GGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGA 27557 ||| ||||| ||||| ||||| || ||||||||||| || || || || |||||| | || Sbjct 61 GGATAAGGAAGGAATCCCTCCTGATCAGCAGCGTCTTATCTTCGCCGGAAAGCAATTGGA 120 Query 27558 GGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 ||||| || || || | || || || |||| ||||| ||||||||||| || || | Sbjct 121 GGATGGCCGAACTCTGTCCGATTACAACATCCAGAAGGAGTCCACTCTTCACCTTGTGCT 180 Query 27618 GCGTCTTCGCGGTGGA 27633 |||||||| || ||| Sbjct 181 CCGTCTTCGTGGAGGA 196 >seq584 Length=118070 Score = 134 bits (148), Expect = 2e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || | |||||||| || || ||||||||| || | || Sbjct 49195 ATGCAGATCTTTGTGAAGACCCTGATAGGCAAGACCATCACCCTTGAGGTTAAGCCCAGT 49136 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | || | |||||| || ||||||||||| || || || |||||| Sbjct 49135 GACATCATTGAGAATGTCAAAGTTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 49076 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||| ||| ||||||| | || || || ||||||| | || | | ||||||| ||| Sbjct 49075 CAGCATCTGATTTTTGTGAGCAAACAGCTGGAGGATGGCCACACTCCATCAGACTACAAT 49016 Query 27586 GTCCAAAAGGAATCCAC 27602 | || || || ||||| Sbjct 49015 ATTCAGAATGAGTCCAC 48999 >seq182 Length=3864254 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 2229629 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 2229688 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||| ||||| || || ||||| |||||| Sbjct 2229689 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 2229748 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || ||||| || || |||| || || || | || || || Sbjct 2229749 CAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 2229808 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || ||||| ||| | ||||| | ||||| Sbjct 2229809 ATCCAGAAGGAGTCGACCCTGCATCTGGTCCTCCGTCTGAGGGGTGG 2229855 >seq312 Length=1320911 Score = 114 bits (126), Expect = 1e-20 Identities = 119/155 (77%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||| | || || || |||||||| | || Sbjct 1167378 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGGCCATCACCCTC-AGGTTGAGCCCAGT 1167320 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || ||| | || ||||||| || ||||||||||| || || || |||||| Sbjct 1167319 GACACCACTGAGAATGTCAAAGCTAAAACCCAAGACAAGGAGGGCATCCCGCCTGACCAG 1167260 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 |||||||| ||||||| || || || || ||||| Sbjct 1167259 CAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGA 1167225 >seq299 Length=1488728 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 27436 AAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATT 27495 ||||| || || || ||||| ||| | |||| | ||| | |||| | |||| | || Sbjct 453298 AAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAAAATGTCAAGGGGACGATC 453239 Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 || || || ||||| || | ||||||||||||| | | || |||||||| || || || Sbjct 453238 CAAGAAAAAGAGGGCATCCTTCCAGACCAGCAGAGGTTGATCTTTGCTGGGAAACAGCTG 453179 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 || |||| || ||||| | ||||| || |||| |||||||||||||| || | ||| Sbjct 453178 GAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAATCCACTCTGCACTTGGTC 453119 Query 27616 TTGCG 27620 |||| Sbjct 453118 CTGCG 453114 >seq180 Length=3735678 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| | || ||| |||| || || || ||||||||||| | Sbjct 1580496 ATGCAGATTTTTGTGAAGACCCCGACGGGCCAGACCATCACCCTCGAGGTTGAGTCCACT 1580437 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | | ||| | || |||||||| | |||||||||| || | || |||||| Sbjct 1580436 GACACTGATAAGAATGTCAAAGCTAAAATCTAAGACAAGGAGGTCATCTCACCTGACCAG 1580377 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||| ||| ||||| | || || || || ||||||| || || || ||||||| || Sbjct 1580376 CAGCATCTGATTTTCACGGGGAAACAGCTGGAGGATGGCCGCACTCTGTCAGACTACGAT 1580317 Query 27586 GTCCAAAAGGAATCCAC 27602 || || || || ||||| Sbjct 1580316 GTTCAGAAAGAGTCCAC 1580300 >seq15 Length=17131269 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | || Sbjct 15347450 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 15347391 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||||| ||| | || |||||||| || ||||||||||| Sbjct 15347390 GACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGG 15347347 >seq98 Length=6767347 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| | || || ||||| || || || ||||| ||| | | Sbjct 4449101 AATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 4449160 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | |||| | |||| || || || || || ||||| || || |||||||| Sbjct 4449161 TGACACCATCGAAAATGTCAAGGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCAGACCA 4449220 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 |||| | | || |||||||| || || || || |||| Sbjct 4449221 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATG 4449258 >seq24 Length=14023012 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 27413 TCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCA 27472 ||||||| |||| || || |||||||| | || || ||||||||| | |||| | || Sbjct 9383925 TCTTTGTGAAGAGCCTGACGGGCAAGACCCTCACCCTCGAGGTTGAGCCCTGTGACACCA 9383866 Query 27473 TTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTC 27532 || ||| | | |||||||| | ||||| ||||| || || || ||||||||||||| Sbjct 9383865 CTGAGAATGTCAGAGCTAAAATCAAAGACAAAGAGGGCATCCCACCTGACCAGCAGCGTC 9383806 Query 27533 TAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 | | ||| || || | || || || || | || |||| ||||||| ||| Sbjct 9383805 TGAGTTTCGCGGGCGAACAGCTGGATGAGGGCCGCACCCCGTCAGACTACAAT 9383753 >seq284 Length=1629120 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||| |||| ||| | || || |||||||| || | |||||||||||| | || Sbjct 1191129 ATGCAGATCCTTGTGAAGGCTCTGACAGGCAAGACCATCCCCCTTGAGGTTGAGCCCAGT 1191070 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || ||||| || ||||||||||| | || || ||||| Sbjct 1191069 GACAACATCGAGAATGTCTTAGCCAAAATCCAAGACAAGGAGGGCACCCCACCTGACCAA 1191010 Query 27526 CAGCGTCTAATTTTTG 27541 |||| ||| ||||||| Sbjct 1191009 CAGCATCTGATTTTTG 1190994 >seq189 Length=3499031 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||| |||| | |||||||| ||||| ||| ||||| |||||| | | |||| Sbjct 2959061 ACCATTATCAATTTGGCTCAGAATTTTGTGGGTAGCAATAATCTGAACCTCTTGCAGCCC 2959002 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| ||| |||| |||||||||||| |||| || | || |||||| Sbjct 2959001 ATTGGTCAGTTTGGTACCAGGCTGCATGGTGGCAAGGATTCTGCTAGTCCTCGATACATC 2958942 Query 32245 TTCAC 32249 ||||| Sbjct 2958941 TTCAC 2958937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568337660682000