Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq96 120 4e-22 >seq96 Length=6608501 Score = 120 bits (132), Expect = 4e-22 Identities = 583/919 (63%), Gaps = 20/919 (2%) Strand=Plus/Minus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 ||||||| |||||||| || || || || || ||| | || ||||| ||||| ||| || Sbjct 982379 GAAGAGGCAGAGTTTCCAATAGCATATTCCATAGTGGTTCATCACAAAATCGAAATGCTC 982320 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 || | ||| ||||||||||||| || ||||| |||||||| | ||||||||| Sbjct 982319 GACAGGCTC-TGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATTCACGTGGACAAA 982261 Query 13803 AAGTCCGGCGACGAGTTCATCCGGG--GC-GTCTCGGCCATCGCCAGGTGCTTCCCTAAC 13859 || |||| | || | | | || || || | ||| || || ||| |||| Sbjct 982260 AAATCCG---AGGAATCCTTTTTGGCTGCAGTGATTGGCATTGCGTCTTGTTTCAGTAAC 982204 Query 13860 GTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCC 13919 || ||||| | ||| | |||||||| | ||| ||||| || || ||||| Sbjct 982203 GTTTTTGTGGCCAGGCAACTGGAGAGTGTGGTGTATGCCTCGTGGAGCCGGGTTCAGGCT 982144 Query 13920 GACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAAC 13979 ||||||| ||||||| |||||| || | | |||| |||| || |||| Sbjct 982143 GACCTCAACTGCATGCAGGACCTCTACAAAATGAATGCGGACTGGAAGTACTTGATCAAT 982084 Query 13980 CTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCC 14039 || ||||| ||||| || ||| | || ||||||||||| || || || ||| ||| | Sbjct 982083 CTCTGCGGTATGGATTTTCCGATTAAAACCAACCTGGAAATTGTCAGGAAGCTCAAGTCG 982024 Query 14040 CTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAAGCTGCACCGCATC 14099 | ||| ||||| ||| || | ||| |||||| ||| || | | Sbjct 982023 TTAATGGGCGAGAACAACCTAGAAACGGAGAAAATGCCCGCCCATAAAAAAGAAAGGT-- 981966 Query 14100 AGGAAGAGGCACGTGGTGGCCAGCGGC----GGCGTGGTGGTCAACACCGGCAGGAACAA 14155 |||| | |||| | ||| | || | || |||| || | |||| Sbjct 981965 -GGAAAAAGCAC----TATACAGTAGTTAATGGAAAGCTGACAAACATGGGGACTGACAA 981911 Query 14156 GGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGTCACCCG 14215 | || || || | || | ||| | || | ||| || |||| ||||| | Sbjct 981910 AATACATCCTCCTCTTGAAACGCCGCTGTTTTCAGGCAGCGCCTATTTTGTGGTCAGTAG 981851 Query 14216 GGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGCACTGGTTCGA 14275 ||||| |||| || || || || | || | | | ||| | ||| | Sbjct 981850 GGAGTATGTGGGCTATGTGCTTGAGAATGAAAAAATCCGGAAGTTTATGGAGTGGGCAAA 981791 Query 14276 GGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCC 14335 || || |||||||| |||||| | || |||||||| | ||||| ||| | | | || Sbjct 981790 AGATACATACAGCCCAGACGAGTATCTCTGGGCCACTATTCAGAGGATGC-CTGAAGTCC 981732 Query 14336 CGGGGGGATCCCCGTTCACGTC-AAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGT 14394 |||| | | || | || |||||||||| || |||||| | | | ||||| Sbjct 981731 CGGGCTCACTGTCCTTAAGTTCTAAGTACGACATGTCAGACATGCACTCTATTGCCAGGT 981672 Query 14395 TCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCG 14454 | || |||||||| |||| || || ||| | || || |||| |||||||| ||| Sbjct 981671 TTGTTAAGTGGCAGTACTTTGAAGGTGATGTTTCCAAGGGCGCCCCCTACCCGCCGTGCA 981612 Query 14455 ACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAAGA 14514 |||||||||||| | | | | || | ||||| | || ||| | || ||| || | Sbjct 981611 GCGGCATCCACGTGCGCTCTGTATGTGTTTTCGGAGCTGGTGACTTAAACTGGATGCTGC 981552 Query 14515 GCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGACGAGTTCGCCGTGCGCT 14574 ||| | |||||||| ||||| ||||| ||| || | ||| || ||| | | | Sbjct 981551 ACGTGCACCACCTGTTTGCCAATAAGTTTGACACAGACATAGACTTCTTTGCCATCCAGT 981492 Query 14575 GTCTGGACGAGGACGTGCG 14593 || |||||||| | |||| Sbjct 981491 GTTTGGACGAGCATCTGCG 981473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656460579936000