Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq240 322 4e-83 seq49 147 2e-30 seq93 91.5 1e-13 seq6 91.5 1e-13 >seq240 Length=2402814 Score = 322 bits (356), Expect = 4e-83 Identities = 484/686 (71%), Gaps = 4/686 (1%) Strand=Plus/Minus Query 29840 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAG 29899 ||||||| || || || | || ||||| | |||||||| || | || || || ||| Sbjct 1020332 GGAAAGGC-CTTGGTTCTCGCTGAAGCTGCATTTTCAGCGGCTCAATGTGATTCATGTAA 1020274 Query 29900 ACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29959 | ||| || ||||||| |||| ||||| || || || | || || |||| ||| || Sbjct 1020273 ATGTGGGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCTGTGATGTGTGCA 1020214 Query 29960 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 30019 |||||||| ||||| || ||||||||||||||||| ||||| | || || |||||||| Sbjct 1020213 ATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCATGCCCAGGCCCATGTCT 1020154 Query 30020 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATG 30079 ||||||| || ||| ||||| || || ||||| |||| |||||| ||||| || | | Sbjct 1020153 CCCGACCACTCGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAGG 1020094 Query 30080 GCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATG 30139 || |||| || || || ||| |||| | | ||||| || |||||||| |||| |||| Sbjct 1020093 GCAGGGCAGGGTGGGAGGGCCGTGAGCGCGAGATCTTTTGGATTCCAGGCACACATGATG 1020034 Query 30140 ATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACC 30199 | | ||||| | |||||| | |||| ||| | || |||||||| || || Sbjct 1020033 ACGATTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGCTGGTCTACT 1019974 Query 30200 CCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGG 30259 || || || || |||| ||| || |||| || || || |||||||||||||| Sbjct 1019973 CCTTCGCCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGA 1019914 Query 30260 AACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAA 30319 || ||||| ||||| || || |||| || | ||| ||| ||| ||||||| Sbjct 1019913 AAGCCGTAAACCGGGCCTAGATCTC---CTGCTCTGGTGGAGAATCCCAGGCTGTCCAAG 1019857 Query 30320 AAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAG 30379 ||||||| ||| || ||||||||||||| || || ||||| ||| ||||| || | | Sbjct 1019856 AAGTCTCGGGACCCACTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCG 1019797 Query 30380 TTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 30439 |||||||| || ||| |||||||||| |||||| || | | ||| || || | Sbjct 1019796 TTTGTGGATCCCTTGATAAACCACAGCAATCCCTCCAAAACATCTTCCCAGAAAACACGT 1019737 Query 30440 TTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACG 30499 ||||| ||||| || ||||| | | | |||| ||| | ||||| | ||||| Sbjct 1019736 TTGGTTGTGAGCAGTGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCTGAACACC 1019677 Query 30500 GACAAGACTCCCGTGCCCGTCCTGTC 30525 |||| | || |||||| | | ||| Sbjct 1019676 GACAGGGTGCCGGTGCCCATGCGGTC 1019651 >seq49 Length=11369404 Score = 147 bits (162), Expect = 2e-30 Identities = 131/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || || |||||||||||||| ||||| Sbjct 7921594 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAATAGCTGGCGATGTTGAAGGGC 7921535 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| ||||||| |||||| ||||| || || ||||| |||| | Sbjct 7921534 ACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 7921475 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | ||||||||| || || || |||||||| Sbjct 7921474 ACGTAGAACTGGCAAAGGGCGTGGCAGGGCGGGAGGGCCATGAG 7921431 Score = 118 bits (130), Expect = 9e-22 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| || || || ||||||||||| || || ||||| ||||| || || || Sbjct 7918387 CATATCTTTGTATTCGGCCCCAAAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATC 7918328 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||| ||||| ||| ||| ||| ||||||| ||||||| ||| || |||||||| Sbjct 7918327 TCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTC 7918268 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| || || ||||| ||| ||||| || | ||||||||| || Sbjct 7918267 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 7918220 >seq93 Length=6788731 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTC-TC 110437 ||||||||| || || || || | || || ||||| |||| || || ||||| | Sbjct 253572 ATGAGCTCCTTGTGGAGGTTCCTTGAATTCTCTACTGAGTACTAAATTAATTCTGTCCTT 253631 Query 110438 TCAGAGGTCTATT-CTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACG 110496 | | ||||| ||| ||| || || ||||||||||| ||||||||||| || ||||||| Sbjct 253632 TTAAAGGTCGATTTCTTCTCTGGAATGGAGAACCAGGTCTTTCTACCAATAATCACCAAA 253691 Query 110497 TTCTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 110530 ||||| || ||| |||||||| | | ||||| Sbjct 253692 TTCTGTTTACCTTCTACTGAAGAGGCTGTGGTCA 253725 >seq6 Length=20809404 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 11039913 TTGAGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 11039972 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| |||||||||||||| ||||||| ||||| || ||| Sbjct 11039973 ATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTCTGTTTACCT 11040020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404940083258700