Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq83363 109 3e-19 seq103000 96.9 2e-15 seq150 91.5 9e-14 >seq83363 Length=456 Score = 109 bits (120), Expect = 3e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| |||||| | ||| | || || || ||||||||||||||||||||| || Sbjct 172 GCCTCCTCGAAGACGGAGCACAAGGTGAAGGGTTGACTCCTTTTGAATGTTATAATCGGA 113 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||| ||| | ||||||||||| || || || || || | ||||||||| || || || Sbjct 112 GAGTGTACGCCCATCTTCAAGTTGCTTTCCTGCGAAAATAAGACGCTGTTGATCAGGTGG 53 Query 34599 CACTCCCTCCTTGTC 34613 | ||| |||||||| Sbjct 52 AATTCCTTCCTTGTC 38 >seq103000 Length=415 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||| | || | || ||||| || || || || || ||||| ||| Sbjct 177 CCTCCTCGAAGACGGAGAACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATCAGAA 236 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | || || |||||||| |||| || || || ||||| || Sbjct 237 AGAGTGCGTCCATCTTCCAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGATCCGGTGGG 296 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| || |||||| |||||| || | | ||| ||||| | ||| || Sbjct 297 ATTCCTTCTTTGTCTTGAATCTTTGCCTTCACATTTTCAATGGTGTCGGAGGCCTCAACC 356 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | || || ||||| ||||||| ||||||||||| ||||||||| Sbjct 357 TCGAGTGTAATTGTTTTCCCGGTTAGGGTTTTCACAAAGATCTGCATG 404 >seq150 Length=4498840 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||||| ||| | ||| || || || ||| |||||| ||||| || || ||||| Sbjct 34180 GCCGCCTCACAGATGACGCACTAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGA 34239 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || ||||| || |||| || | || ||| || || || || Sbjct 34240 CAGAGTGCGGCCATCCTCTAGCTGTTTGCCCACAAAAATCAGACACTGCTGATCAGGTGG 34299 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | ||| || | ||| ||||| | ||| | Sbjct 34300 GATGCCCTCCTTGTCTTGGAT-TTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCAA 34358 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || || || | || |||||||| |||||||| Sbjct 34359 CCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 34407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313668147376925