Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq83363 129 5e-25 seq182 123 2e-23 seq103000 120 3e-22 seq103970 84.2 2e-11 >seq83363 Length=456 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || |||||||| |||| || ||| | || ||| | ||||||||| | || Sbjct 172 CATGCAAATTTTCGTAAAAACCTTGACGGGGAAGACCATCACTTTGGAAGTGGAAGCCTC 231 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || |||| || || |||||||||||||| ||||| || ||||| ||||| Sbjct 232 TGATACAATCGAGAATGTGAAGGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCA 291 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||| ||||| | ||||| | ||| | || || ||||| Sbjct 292 GCAGCGTCTCATCTTTGCCGGAAAACAGCTTGAAGATGGACGTACCCTCTCTGACTACAA 351 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| |||||||| || ||| | ||| | ||| | ||| | || || || || Sbjct 352 CATCCAAAAGGAATCAACCCTCCATCTTGTTCTCCGTCTCCGAGGAGGAAT 402 Score = 102 bits (112), Expect = 7e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27054 ATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGT 27113 ||||||| || ||| |||||||| ||||| ||||| || ||||| |||||||||||| Sbjct 11 ATTGAGAATGTGAAAGCGAAAATTCAGGACAAGGAAGGAATTCCACCTGATCAACAGCGT 70 Query 27114 TTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAA 27173 | || | ||| || || ||| | ||||| | || | |||||||| ||||||||| Sbjct 71 CTTATTTTCGCAGGAAAGCAACTTGAAGATGGGCGTACACTCTCCGATTATAACATTCAA 130 Query 27174 AAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| ||| | || | || | ||| | || || ||||| Sbjct 131 AAGGAGTCAACCCTTCACCTTGTGCTCCGTCTTCGAGGAGGCAT 174 >seq182 Length=3864254 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || ||||| || | Sbjct 2229629 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 2229688 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || || || |||||||| || || || || Sbjct 2229689 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 2229748 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| ||||| || ||||||| | || |||| ||||||||| Sbjct 2229749 CAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 2229808 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||||||| | ||| |||| | ||| || |||||||| Sbjct 2229809 ATCCAGAAGGAGTCGACCCTGCATCTGGTCCTCCGTCTGAGGGGTGGC 2229856 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || || || || ||||| || Sbjct 2229401 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2229460 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || || || |||||||| || || || || Sbjct 2229461 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCAG 2229520 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| ||||| || ||||||| | || |||||||||||||| Sbjct 2229521 CAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCCGATTACAAC 2229580 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | ||| |||| ||||| || ||||||| || Sbjct 2229581 ATCCAGAAGGAGTCGACCCTGCATCTGGTCCTGCGTCTGAGGGGTGGTAT 2229630 >seq103000 Length=415 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| ||||| || ||||| || | ||||| || || || || | || Sbjct 404 CATGCAGATCTTTGTGAAAACCCTAACCGGGAAAACAATTACACTCGAGGTTGAGGCCTC 345 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||| | || || ||| ||||||||||||||||| || ||||| ||||| Sbjct 344 CGACACCATTGAAAATGTGAAGGCAAAGATTCAAGACAAAGAAGGAATCCCACCGGATCA 285 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || |||| | ||||| || || |||||||| | || |||| |||||||| Sbjct 284 GCAACGGCTAATCTTTGCCGGAAAGCAGTTGGAAGATGGACGCACTCTTTCTGATTACAA 225 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || || | || | ||| | ||| | || || || || Sbjct 224 TATCCAGAAAGAATCAACTCTTCACCTTGTTCTCCGTCTTCGAGGAGGAAT 174 Score = 118 bits (130), Expect = 9e-22 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||| || || | || ||||||||||| || | || Sbjct 175 ATGCAGATCTTTGTGAAGACTCTGACTGGAAAAACAATCACTCTTGAAGTCGAGGCCTCA 116 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| |||||||||||||| ||||| || ||||| ||||| Sbjct 115 GACACAATCGAGAATGTGAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCAGATCAG 56 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGA 27160 ||||| | || | |||||||| ||| | |||||| | ||| ||||||| Sbjct 55 CAGCGACTTATTTTTGCCGGCAAGCAACTAGAAGACGGCCGTACCCTTTCCGA 3 >seq103970 Length=412 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 || ||||| || || || | || ||| | || |||| || || || ||||| || Sbjct 5 ATCACTCTCGAGGTTGAGGCCTCTGACACCATCGAGAATGTGAAGGCCAAGATTCAGGAT 64 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || ||||| || || || ||||| |||||| | || | |||||| || |||||||| || Sbjct 65 AAGGAAGGAATCCCTCCTGATCAGCAGCGTCTTATCTTCGCCGGAAAGCAATTGGAGGAT 124 Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184 | || | |||||||||||||| || |||||||| || Sbjct 125 GGCCGAACTCTGTCCGATTACAACATCCAGAAGGAGTCCAC 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433454789527925