Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq240 383 1e-101 seq49 159 3e-34 seq285 149 6e-31 >seq240 Length=2402814 Score = 383 bits (424), Expect = 1e-101 Identities = 554/778 (71%), Gaps = 4/778 (1%) Strand=Plus/Plus Query 34074 GCCCCCACTCTCAACCGCATGGGGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCA 34133 ||| |||| | | |||||| |||||| |||||| || ||| | || |||||| Sbjct 1019572 GCCGCCAC-CGCCACCGCACGGGGAGCTGCAGTACTTGGGGCAGATTAAGCACATCCTCC 1019630 Query 34134 GGGAGGGCTACCGGAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACAC 34193 | ||| |||||||| ||||| | || || || ||||| || |||||| ||| | Sbjct 1019631 GCTGCAGCTCCCGGAAGGATGACCGCATGGGCACCGGCACCCTGTCGGTGTTCAGCATGC 1019690 Query 34194 AGGCCCGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGA 34253 |||| || |||| ||| | | |||||||| ||||| || || |||||||| | |||| Sbjct 1019691 AGGCGCGCTACAGCCTGAGAGATGAATTTCCACTGCTCACAACCAAACGTGTTTTCTGGG 1019750 Query 34254 AGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCT 34313 | | || | |||| |||||||||| | | ||| |||| ||| | |||||||| | Sbjct 1019751 AAGATGTTTTGGAGGGATTGCTGTGGTTTATCAAGGGATCCACAAACGCTAAGGAGCTGT 1019810 Query 34314 CGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGG 34373 | ||| ||| ||||| ||||||||||| ||||| |||||||| |||||| | || Sbjct 1019811 CTTCCAAGGGAGTGAAAATCTGGGACGCCAGTGGGTCCCGAGACTTCTTGGACAGCCTGG 1019870 Query 34374 GGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACT 34433 | ||| | | | ||| ||| || | |||||||| ||||| || |||||||| || | Sbjct 1019871 GATTCTC--CACCAGAGCAGGA-GATCTAGGCCCGGTTTACGGCTTTCAGTGGAGGCATT 1019927 Query 34434 TTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGC 34493 ||||||| || || | | || | || ||||| || | |||| |||||||||| Sbjct 1019928 TTGGGGCCGAATACAAAGATATGGATTCAGATTATTCAGGCGAAGGAGTAGACCAGCTGC 1019987 Query 34494 AGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGT 34553 || | |||| ||||| | || |||||| ||||||||| || | ||||| || | Sbjct 1019988 AGAAGGTGACTGACACAATCAAAACCAACCCTAATGACAGAATCGTCATCATGTGTGCCT 1020047 Query 34554 GGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCT 34613 |||| || || |||||| | || | ||| ||||| || |||| |||| ||||| |||| Sbjct 1020048 GGAATCCAAAAGATCTCGCGCTCACGGCCCTCCCACCCTGCCCTGCCCTTTGCCAGTTCT 1020107 Query 34614 ACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAG 34673 |||| | ||| || ||||||||||||||||| || | | |||||||||||||| | | Sbjct 1020108 ACGTGGTGAACGGTGAGCTGTCCTGCCAGCTGTACGAGTGGTCGGGAGACATGGGCCTGG 1020167 Query 34674 GGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGG 34733 | |||| |||||||| || || ||| | |||||||| |||||||| || || || | Sbjct 1020168 GCATGCCCTTCAACATCGCCAGCTACTCCCTGCTCACCTACATGATTGCACACATCACAG 1020227 Query 34734 GGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACA 34793 | || || || || | || || || ||||| ||||| || || ||| |||| |||| Sbjct 1020228 GCCTGAAGCCAGGTGACTTTGTACACACTTTGGGAGATGCCCACATTTACATGAATCACA 1020287 Query 34794 TCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT 34851 | |||| ||| || ||||| || ||||| || | || |||| |||||||||| Sbjct 1020288 TTGAGCCGCTGAAAATGCAGCTTCAGCGAGAACCAAGGCCTTTCCTGAAGCTCAAAAT 1020345 Score = 383 bits (424), Expect = 1e-101 Identities = 554/778 (71%), Gaps = 4/778 (1%) Strand=Plus/Minus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 |||||||||| |||| || | || ||||| || ||||| || ||| |||| ||| Sbjct 1020345 ATTTTGAGCTTCAGGAAAGGCCTTGGTTCTCGCTGAAGCTGCATTTTCAGCGGCTCAATG 1020286 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || |||| ||| || || ||||| ||||| || || || | || || || || || Sbjct 1020285 TGATTCATGTAAATGTGGGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCT 1020226 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 || || || |||||||| |||||||| | ||| || || |||||||| |||| || Sbjct 1020225 GTGATGTGTGCAATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCATGCCC 1020166 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAG 6733 | |||||||||||||| | | || ||||||||||||||||| || ||| | |||||| Sbjct 1020165 AGGCCCATGTCTCCCGACCACTCGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAG 1020106 Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCAC 6793 || ||||| |||| |||| || ||||| ||| | || | |||||| || || ||||| Sbjct 1020105 AACTGGCAAAGGGCAGGGCAGGGTGGGAGGGCCGTGAGCGCGAGATCTTTTGGATTCCAG 1020046 Query 6794 GCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC 6853 || ||||| | || ||||||||| |||||| || | ||||| |||| | |||| Sbjct 1020045 GCACACATGATGACGATTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGC 1019986 Query 6854 AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAG 6913 |||||||| |||| | || ||||| || | || | | || || |||||||| Sbjct 1019985 AGCTGGTCTACTCCTTCGCCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAA 1019926 Query 6914 TGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCC 6973 || |||||||| || ||||| |||||||| | || ||| ||| | | | ||| ||| Sbjct 1019925 TGCCTCCACTGAAAGCCGTAAACCGGGCCTAGATC-TCCTGCTCTGGTG--GAGAATCCC 1019869 Query 6974 CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAG 7033 | |||||| |||||||| ||||| ||||||||||| ||||| ||| ||| || Sbjct 1019868 AGGCTGTCCAAGAAGTCTCGGGACCCACTGGCGTCCCAGATTTTCACTCCCTTGGAAGAC 1019809 Query 7034 AGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTC 7093 |||||||| | ||| |||| ||| | | |||||||||| |||| | || | | | Sbjct 1019808 AGCTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAATCCCTCCAAAACATCTTCC 1019749 Query 7094 CAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCTGT 7153 ||| | |||||||| || || ||||| |||||||| | | ||| |||| || ||||| Sbjct 1019748 CAGAAAACACGTTTGGTTGTGAGCAGTGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGC 1019689 Query 7154 GTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTCCGGTAGCCCTCCCTG 7213 ||| |||||| || ||||| || || || | ||||| |||||||| ||| | | Sbjct 1019688 ATGCTGAACACCGACAGGGTGCCGGTGCCCATGCGGTCATCCTTCCGGGAGCTGCAGCGG 1019629 Query 7214 AGGATCCGCGCCACCTGATACAGATACTGCCACTCCCCATGCGGTTGAGAGTGGGGGC 7271 ||||| || | ||| || |||||| |||||| |||||| | | |||| ||| Sbjct 1019628 AGGATGTGCTTAATCTGCCCCAAGTACTGCAGCTCCCCGTGCGGTGGCG-GTGGCGGC 1019572 >seq49 Length=11369404 Score = 159 bits (176), Expect = 3e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 |||||||| || ||||| ||||| || |||||| |||| ||||| |||||||| | ||| Sbjct 7921422 GATCTCCCGCTCATGGCCCTCCCGCCCTGCCACGCCCTTTGCCAGTTCTACGTGGTGAAC 7921481 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || || |||||||||||||| | || ||||| ||| Sbjct 7921482 GGTGAGCTGTCCTGCCAGCTGTACCAGCGGTCGGGAGACATGGGCCTGGGCGTGCCCTTC 7921541 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || || | |||||||| ||||||||||| || Sbjct 7921542 AACATCGCCAGCTATTCCCTGCTCACCTACATGATCGCACA 7921582 Score = 159 bits (176), Expect = 3e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| | || || || |||||||| ||||| || | ||| Sbjct 7921582 TGTGCGATCATGTAGGTGAGCAGGGAATAGCTGGCGATGTTGAAGGGCACGCCCAGGCCC 7921523 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||| || || || ||||||||||||||||| || ||| | |||||||| ||| Sbjct 7921522 ATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 7921463 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || |||| |||||| || ||||| ||||| || |||||||| Sbjct 7921462 CAAAGGGCGTGGCAGGGCGGGAGGGCCATGAGCGGGAGATC 7921422 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| ||| | |||||||| || ||| ||| ||||| ||||||||||| | ||||| | Sbjct 7918224 CCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGACGCCAATGGGTCCC 7918283 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 ||||||| |||||| | ||| ||| | | | || || || || | |||||||| | Sbjct 7918284 GAGACTTCTTGGACAGCCTGGGATTCTCCACCAGAGAAGAAGGAGATCTAGGCCCGGTTT 7918343 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 |||| || || ||||| || |||||||| || || Sbjct 7918344 ACGGCTTTCAATGGAGGCATTTTGGGGCCGAATA 7918377 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||| || || ||||| |||||||| | || || || || Sbjct 7918377 TATTCGGCCCCAAAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATCTCCTTCTTCT 7918318 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||| ||| | |||||| |||||||| ||||| | ||||||||||| ||| Sbjct 7918317 CTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTCCCAGATTTTC 7918258 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || |||||||| | ||| |||| Sbjct 7918257 ACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGG 7918224 >seq285 Length=1675874 Score = 149 bits (164), Expect = 6e-31 Identities = 364/551 (66%), Gaps = 42/551 (8%) Strand=Plus/Plus Query 34172 ACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGGGGCGAATTTCCGCTGCTG 34231 ||||| | |||||| |||| ||||| || |||| ||| ||| | ||||| ||| || Sbjct 1651478 ACCCTGCCGGTGTTCCGCACGCAGGCGCGCTACAGCCTGAGGG---AGTTTCCCCTGGTG 1651534 Query 34232 ACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGG 34291 || | ||||||| | ||||||||| || |||||| |||||||||| | | ||| Sbjct 1651535 ACAGCCAAACGTGGTTTCTGGAAGGGTGTTTGGGAGGAGTTGCTGTGGTTTATCACGGGA 1651594 Query 34292 GCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCT 34351 |||| ||| | ||||||| || ||| |||| | || ||||| Sbjct 1651595 TCCACAAACGCTGAGGAGCTGTCTTCCTGGGGTGCCAAT---------------GGGTCC 1651639 Query 34352 CGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTC 34411 ||||||| |||| | ||| || | || |||| |||| || || |||| || Sbjct 1651640 TGAGACTTCTCCGACAGCCTGGGATTGTCCTCCAGGGA--AGGG-GATTTAAGCCCAGTG 1651696 Query 34412 TACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAG-CGGACTA-TT 34469 || |||| || || ||||| || || || | | | | | || || || Sbjct 1651697 TA-----------GGAGGCATTTGGGGGCCGAATA-CGAAGATGTGGATTCAGATTAATT 1651744 Query 34470 CGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATG 34529 |||| ||||||| ||||| || | |||| ||| | || ||| ||| | Sbjct 1651745 CGGGTCAGGGAGTAGACCAACTATAAACGGTGACTAACATGATCAAAACCAACGTTGACG 1651804 Query 34530 ACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCC 34589 ||||||| ||| | |||| || ||||| || || ||||| ||||| |||| ||||||| Sbjct 1651805 ACAGAAGAATCATCCTGTGAGCTTGGAATCCCAAAGATCTTCCTCTCCTGGCCCTCCCCC 1651864 Query 34590 CGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATC 34649 | |||| |||| ||||| ||||| | || ||||||||||||| ||| || | Sbjct 1651865 CACGCCATGCCCTTTGCCAGTTCTAGGA-------GGTGAGCTGTCCTGCCGGCTGTACC 1651917 Query 34650 AACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCA 34709 | || ||| ||| ||| | || ||||| |||||||| | | ||| | ||||||| Sbjct 1651918 ACTTGTCAGGACACAGGGGCCTGGGTGTGCCCTTCAACATCACCCGCTACACCCTGCTCA 1651977 Query 34710 CGTACATGATC 34720 | ||||||||| Sbjct 1651978 CCTACATGATC 1651988 Score = 149 bits (164), Expect = 6e-31 Identities = 364/551 (66%), Gaps = 42/551 (8%) Strand=Plus/Minus Query 6625 GATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTC 6684 ||||||||| |||||||| | ||| | | |||||||| ||||| || | ||| ||| Sbjct 1651988 GATCATGTAGGTGAGCAGGGTGTAGCGGGTGATGTTGAAGGGCACACCCAGGCCCCTGTG 1651929 Query 6685 TCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAG 6744 ||| || || || ||| ||||||||||||| || | ||||| ||||| || Sbjct 1651928 TCCTGACAAGTGGTACAGCCGGCAGGACAGCTCACC-------TCCTAGAACTGGCAAAG 1651876 Query 6745 GGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCAC 6804 || |||| |||||||| |||| ||||| ||||| || || ||||| || |||| | Sbjct 1651875 GGCATGGCGTGGGGGGAGGGCCAGGAGAGGAAGATCTTTGGGATTCCAAGCTCACAGGAT 1651816 Query 6805 GATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGC 6864 ||| |||||||| ||| ||| || | ||| |||| | || ||||| | Sbjct 1651815 GATTCTTCTGTCGTCAACGTTGGTTTTGATCATGTTAGTCACCGTTTATAGTTGGTCTAC 1651756 Query 6865 TCCCTGTCCCGAA-TAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCAC 6922 |||||| |||||| || || | | | | | || || || ||||| || || |||| Sbjct 1651755 TCCCTGACCCGAATTAATCTGAATCCACATCTTCG-TATTCGGCCCCCAAATGCCTCC-- 1651699 Query 6923 TGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCC 6982 || || |||| || || |||| |||| || | || ||| | |||| Sbjct 1651698 ---------TACACTGGGCTTAAATC-CCCT--TCCCTGGAGGACAATCCCAGGCTGTCG 1651651 Query 6983 AGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTG 7042 ||||||| ||||| || | |||| ||| || ||||||| Sbjct 1651650 GAGAAGTCTCAGGACCC---------------ATTGGCACCCCAGGAAGACAGCTCCTCA 1651606 Query 7043 GTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACA 7102 | ||| |||| ||| | | |||||||||| |||||| || ||||||||| | || Sbjct 1651605 GCGTTTGTGGATCCCGTGATAAACCACAGCAACTCCTCCCAAACACCCTTCCAGAAACCA 1651546 Query 7103 CGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGAAC 7162 ||||| | |||| ||| ||||| | ||| ||| |||| || ||||| |||| |||| Sbjct 1651545 CGTTTGGCTGTCACCAGGGGAAACT---CCCTCAGGCTGTAGCGCGCCTGCGTGCGGAAC 1651489 Query 7163 ACGGAGAGGGT 7173 || | ||||| Sbjct 1651488 ACCGGCAGGGT 1651478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446711832342000