Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq72 178 1e-39 seq93 150 1e-31 seq59 136 3e-27 seq240 132 4e-26 seq55 118 9e-22 >seq72 Length=8065517 Score = 178 bits (196), Expect = 1e-39 Identities = 190/251 (76%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || |||||||| | ||||| |||||||||||| | || || ||| || ||||||||| Sbjct 2278 CCCCAAGAAGTCTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGTCCGGAAAACATG 2337 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| || || | |||| |||||||| || ||||| || || || || || || ||| Sbjct 2338 ATCACCTTCAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAGATAAAC 2397 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || |||| ||||| ||| |||| || ||||||||||| || || ||||| ||| Sbjct 2398 ATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTGGAGGAT 2457 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || ||||| |||||||| | || || || ||||| ||||||||||| |||||| ||| Sbjct 2458 GAGGGGTGTTACAAGTGCCTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGAGTAGCC 2517 Query 1515 TGTCTAACCCT 1525 || || ||||| Sbjct 2518 TGCCTCACCCT 2528 >seq93 Length=6788731 Score = 150 bits (166), Expect = 1e-31 Identities = 326/477 (68%), Gaps = 17/477 (4%) Strand=Plus/Minus Query 2215 AATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAAT 2271 ||||||||||| |||| ||| |||||| | | ||||| || ||||||||| Sbjct 253750 AATGAATTTAAGTATTTCAAAAGAATGACCACAGCCTCTTCAGTAGAAGGTAAACAGAAT 253691 Query 2272 GTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAA-AAGCAGGCCTTTGAA 2330 | || ||||| || |||||||| ||||| || |||| || || | ||||| || Sbjct 253690 TTGGTGATTATTGGTAGAAAGACCTGGTTCTCCATTCCAGAGAAGAAATCGACCTTTAAA 253631 Query 2331 CA-ACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACT 2389 ||||||| ||| | || ||||||||| | | || || || |||| || ||||| | Sbjct 253630 AGGACAGAATTAATTTAGTACTCAGTAGAGAATTCAAGGAACCTCCACAAGGAGCTCATT 253571 Query 2390 TTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACC-AGAATTAAAAGAC 2448 || |||| |||||| | ||| | || | || ||| ||| | | |||||||| | | Sbjct 253570 TTCTTGCCAAAAGTCTGGATGATGCCTTAAAACTTACC-TAGCAACTAGAATTAACAAAT 253512 Query 2449 AGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATT-ACAAG 2507 | ||||| | |||||| | | || || || ||||| ||| |||| ||| ||||| Sbjct 253511 AAAGTGGACATAGTTTGGACAGT-GGAGGCAGTTCTGTTTATAAGGAAGCCATGGACAAG 253453 Query 2508 ATCTTGCAAA---CAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATAC 2564 | || | ||||| ||| | |||||||| |||| |||||||| |||| Sbjct 253452 --CCAGCCCATCTCAGATT---TTTGTGACAAGGATCATGCAGGAATTTGAAAGTGACCT 253398 Query 2565 ATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCC 2624 | || ||||||||| || | ||||| || | ||| | || |||||| ||||| Sbjct 253397 GTTTTTTCCAGAAATTGATTTGGAAAAATATAAGCTTCTTCCAAAACATCCAGGCGTTCC 253338 Query 2625 CTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaa 2681 |||| ||| ||||| || || | |||| ||||||||||| || ||||||| || Sbjct 253337 TTCTGACGTCCAAGAGGAGAAAAGCATTAAGTACAAATTTGAACTACATGAAAAGAA 253281 >seq59 Length=9252037 Score = 136 bits (150), Expect = 3e-27 Identities = 365/546 (67%), Gaps = 19/546 (3%) Strand=Plus/Minus Query 2155 GCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAA 2214 ||||| || | || |||| || || || || || | ||||| ||||| || | | Sbjct 1370187 GCTGTGTCCCAGAACATGGATATGGGCAAGAACGGGGACCTGCCCTGGCCCCCGGTCAGG 1370128 Query 2215 AATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAAT 2271 |||||||| || | || |||| |||||| | | |||| || || |||| | Sbjct 1370127 AATGAATTCAAGTACTTCCAAAGAATGACCACAGCCTCTTTAGTAGAAGGTAAGCAGAGT 1370068 Query 2272 GTTGTAATTATGGGAAGAAAGACATGGTTTTC-ACTTCCCATTAAAAGCA--GGCCTTTG 2328 | || |||||||| || ||||| ||||| || ||| || | ||| | | ||||| Sbjct 1370067 TTGGTGATTATGGGTAGGAAGACCTGGTTCTCCACT---CAAGAGAAGAACTGACCTTTA 1370011 Query 2329 AACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCAC 2388 || ||||||| ||| | ||||| |||||| | || | || | |||| || ||||| Sbjct 1370010 AAGGACAGAATTAATTTAGTTCTAAGTAGAGAACTCAGGGAACTTCCACA-GGAGCTCAT 1369952 Query 2389 TTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGAC 2448 ||| ||| |||||| | ||| | || | || |||| ||||||| ||| | | Sbjct 1369951 TTTTTTGACAAAAGTCTGGATGATGCCTTAAAACTTATTGAGCAACCAGAAATAACAAAT 1369892 Query 2449 AGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATT--ACAA 2506 | | || | |||||||| | || || || ||||| || |||| ||| | |||| Sbjct 1369891 TAAGCAGTTATGTTTTGGATAGTGGGAGGTAGCTCTGTTTA--AGGA-AGCCGTGGACAA 1369835 Query 2507 GATCTTGCAAAC--AGATGCTGTTTTTA-ACAAGGATTCTGCAAAAATTTGAATGTGATA 2563 | | || | | |||| | | |||||||| |||| ||||||| ||| | Sbjct 1369834 GC-CAGGCCATCTTAGATTATCCTGCAGGACAAGGATCATGCAGGAATTTGAGAGTGGCA 1369776 Query 2564 CATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTC 2623 || || | ||||| | || | |||||||||| ||| | |||| |||||||||| Sbjct 1369775 TATTTTTTCTAGAAACTGATTTGGAAAAATACAAACTTCTTCCAGAATAGCCAGGTGTTC 1369716 Query 2624 CCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaaaa 2683 |||||| || || || |||| || ||||| ||||||||||| |||||||||| || | Sbjct 1369715 CCTCTGATGTCCAGGAGAAAAAAGGCATTAGGTACAAATTTGAAGTATATGAAAAGAACA 1369656 Query 2684 CATAAT 2689 |||| Sbjct 1369655 ATTAAT 1369650 >seq240 Length=2402814 Score = 132 bits (146), Expect = 4e-26 Identities = 406/615 (66%), Gaps = 17/615 (3%) Strand=Plus/Minus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 || || | |||||| ||||||||||||||||| || | || ||||| || | || ||| Sbjct 1020309 AGCTGCATTTTCAGCGGCTCAATGTGATTCATGTAAATGTGGGCATCTCCCAAAGTGTGT 1020250 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575 | || ||||| || | || ||||| | ||| ||||||||||| || | || |||| Sbjct 1020249 ACAAAGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGAGTAG 1020190 Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635 ||||| | || || || | ||||| ||||||||| | || | || ||||| ||||| Sbjct 1020189 CTGGCGATGTTGAAGGGCATGCCCAGGCCCATGTCTCCCGACCACTCGTACAGCTGGCAG 1020130 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 || ||||| ||||| | || || ||||| | | | | || || || || || | Sbjct 1020129 GACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCAGGGCAGGGTGGGAGGGCCGT- 1020071 Query 118696 GAACTC-AGTTGGGCAGGATTCCAGGCTGTTAAAACATGCC--TTCTG-CTATATGGTTC 118751 || | | || | ||||||||||| | | ||| | ||||| | || |||| Sbjct 1020070 GAGCGCGAGATCTTTTGGATTCCAGGC--ACACATGATGACGATTCTGTCATTAGGGTTG 1020013 Query 118752 TACCTGTATACCCTCAATTAAATTCTGAATCTGATCCACACCCTTTCCAGTATACTGAGA 118811 || || ||| | | ||||| | ||| || || || | || | ||| | || Sbjct 1020012 GTTTTG-ATTGTGTCAGTCACCTTCTGCAGCTGGTCTACTCCTTCGCCTGAATAATCTGA 1019954 Query 118812 CTCGCAT-CCTTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCA 118870 || ||| |||| ||||| ||||||||| ||||| ||||| || ||||| || || | Sbjct 1019953 ATC-CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCGTAAACCGGGCCTA 1019895 Query 118871 GATCTCC--CTGGGACCTAAAATCTAAACCTACTTTTCTCTGAAATTCTTTTGACCCATT 118928 ||||||| || | | |||| || | || | || ||| |||||| | Sbjct 1019894 GATCTCCTGCTCTGGTGGAGAATC----CCAGGCTGTC-CAAGAAGTCTCGGGACCCACT 1019840 Query 118929 AGCATTCCAAATAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTTAA 118988 || | ||| || ||||| || | ||| || |||| |||||| || || | | Sbjct 1019839 GGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGAT 1019780 Query 118989 AAACCAAAGAAGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGG 119048 |||||| || | |||| | ||| || ||| ||||| ||| ||||| | |||||| Sbjct 1019779 AAACCACAGCAATCCCTCCAAAACATCTTCCCAGAAAACACGTTTGGTTGTGAGCAGTGG 1019720 Query 119049 AAACTGACCTCTAAG 119063 ||| | | |||| || Sbjct 1019719 AAATTCATCTCTCAG 1019705 >seq55 Length=9879816 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 244464 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 244523 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 244524 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 244583 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || | | ||||||||| || Sbjct 244584 ATCGTCCTGTGGATGACTGA 244603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413078941372900