Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq182 181 2e-40 seq103970 178 3e-39 seq103000 174 4e-38 seq83363 147 5e-30 seq260794 138 3e-27 seq150 120 7e-22 seq299 107 4e-18 seq98 98.7 2e-15 seq8 93.3 1e-13 seq55 89.7 1e-12 seq24 89.7 1e-12 seq180 86.0 1e-11 >seq182 Length=3864254 Score = 181 bits (200), Expect = 2e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || || ||||| || |||||||| ||||| | ||| || | |||||| Sbjct 2229612 AGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCT 2229553 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||||||||| || | || |||||||| || | |||||||| ||| Sbjct 2229552 TCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCC 2229493 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| |||||||||||| | || ||||| || ||||| ||| Sbjct 2229492 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 2229433 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| | ||||| || || | ||||||||| Sbjct 2229432 TTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTT 2229398 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || || ||||| || |||||||| ||||| | ||| || | |||||| Sbjct 2229840 AGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 2229781 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||||||||| || | || ||||||||||| | |||||||| ||| Sbjct 2229780 TCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCC 2229721 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 2229720 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 2229661 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 2229660 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2229629 >seq103970 Length=412 Score = 178 bits (196), Expect = 3e-39 Identities = 155/193 (80%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || |||||||||||||||||||| || |||||||| ||||| | || Sbjct 193 TCCACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAG 134 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| |||| ||||| || ||||||||||| || || || |||||||| | Sbjct 133 AGTTCGGCCATCCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGGGAT 74 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||||||| ||||| ||||| ||||| || ||||||||||||||| |||||||| Sbjct 73 TCCTTCCTTATCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCAGAGGCCTCAACCTC 14 Query 211070 GAGAGTGATCGTC 211082 ||||||||| ||| Sbjct 13 GAGAGTGATGGTC 1 >seq103000 Length=415 Score = 174 bits (192), Expect = 4e-38 Identities = 171/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || |||||||||||||| || ||||| ||||| || ||||| | ||| || Sbjct 183 CGAAGACGGAGAACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATCAGAAAGAGTG 242 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||||| |||||| || || ||||| || ||||| || || || || | |||| Sbjct 243 CGTCCATCTTCCAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGATCCGGTGGGATTCCT 302 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| || |||||| ||||| ||||| |||||||| ||| ||||||||||| Sbjct 303 TCTTTGTCTTGAATCTTTGCCTTCACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGT 362 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || || || || ||||| | |||||| Sbjct 363 GTAATTGTTTTCCCGGTTAGGGTTTTCACAAAGATCTGCAT 403 Score = 125 bits (138), Expect = 2e-23 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 210947 AAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||| | || ||||| || |||||||| || || ||||| || || || || || || Sbjct 8 AAGGGTACGGCCGTCTTCTAGTTGCTTGCCGGCAAAAATAAGTCGCTGCTGATCTGGTGG 67 Query 211007 AACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAAC 211066 | |||||||||||| || || || |||||| || ||||| ||||| ||| || || Sbjct 68 GATTCCTTCCTTGTCTTGAATTTTGGCTTTCACATTCTCGATTGTGTCTGAGGCCTCGAC 127 Query 211067 CTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || |||||||| || ||||| || |||||||| ||||| | ||||||| Sbjct 128 TTCAAGAGTGATTGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCATT 176 >seq83363 Length=456 Score = 147 bits (162), Expect = 5e-30 Identities = 131/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || ||||||||||| || ||||| ||||| ||||||||||| | || || Sbjct 165 CGAAGACGGAGCACAAGGTGAAGGGTTGACTCCTTTTGAATGTTATAATCGGAGAGTGTA 106 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| || ||||| |||||||| ||||| || ||||| ||||| |||| |||| Sbjct 105 CGCCCATCTTCAAGTTGCTTTCCTGCGAAAATAAGACGCTGTTGATCAGGTGGAATTCCT 46 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGA 211057 ||||||||||| || || |||||| || || ||||| ||||| Sbjct 45 TCCTTGTCCTGAATTTTCGCTTTCACATTCTCAATGGTATCAGA 2 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || || || || ||||||||||| || || | ||||| | ||||||| Sbjct 384 AGAACAAGATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGTCCATCT 325 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| || || || ||||| || || || || || || |||| |||||||||||| Sbjct 324 TCAAGCTGTTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCT 265 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||||| || ||||| || |||||| ||| || || | |||||| ||| Sbjct 264 TGAATTTTCGCCTTCACATTCTCGATTGTATCAGAGGCTTCCACTTCCAAAGTGATGGTC 205 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | || ||||| || | ||||| Sbjct 204 TTCCCCGTCAAGGTTTTTACGAAAATTTGCAT 173 >seq260794 Length=213 Score = 138 bits (152), Expect = 3e-27 Identities = 130/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| || || ||||| ||||| |||||||| |||||||| ||||| | | || Sbjct 37 ACGTAGTCGGAGAACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAATCGGACAAAGT 96 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||| || || ||||| || ||||| || || || || || || || | ||| Sbjct 97 GCGTCCATCTTCGAGTTGTTTGCCAGCAAAGATCAGTCGCTGCTGATCTGGGGGGATTCC 156 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 ||| |||||||||||||| ||||||||||| |||||||||||| Sbjct 157 TTCTTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCAGAG 202 >seq150 Length=4498840 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || |||||||| || || || || || || | || || | ||||| || ||||| Sbjct 34204 GTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGAGTGCGGCCATCCTCTAGCTG 34263 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||||| | || || || | || || ||||| || | || |||||||| ||||| || Sbjct 34264 TTTGCCCACAAAAATCAGACACTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGGATTTT 34323 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || || || ||||||||| | ||||||||||| ||||| ||||| ||||| Sbjct 34324 AGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCCGT 34383 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| | |||||| Sbjct 34384 CAGGGTCTTCACAAAGATCTGCAT 34407 >seq299 Length=1488728 Score = 107 bits (118), Expect = 4e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| |||||||| || || |||||||| || || | ||||| | |||||| Sbjct 453117 AGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 453176 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| || || || ||||| | | || ||||| ||| | | || || || || Sbjct 453177 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGAAGGATGCCCTCTTTTTCT 453236 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||| | || || ||||||||||||||| | || ||||| || ||||| ||| Sbjct 453237 TGGATCGTCCCCTTGACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 453296 Query 211083 TT 211084 || Sbjct 453297 TT 453298 >seq98 Length=6767347 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||||||||| || || || ||||| | | || ||||| || || | || || Sbjct 4449259 CCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCT 4449200 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || || |||||||| || || ||||||||||||||| | || ||||| || ||| Sbjct 4449199 TTTTCTTGGATCTTCCCCTTGACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 4449140 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| ||||| | ||||| || || | ||||||| Sbjct 4449139 ATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATT 4449101 >seq8 Length=20427491 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/128 (77%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||| | ||| |||||||| | |||||| ||||| | ||| | | ||||||| Sbjct 12640482 AGGACCAGGTACAAAGTTGACTCTTTCTAGATGTTTTAATCAGAAAGAGGACATCCATCT 12640541 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||||| ||||| || || |||||||| | | ||||||||| | Sbjct 12640542 TCCAGCTGTGTGCCTGCAAAGATGAGTGTCTGCTGGTCAGG-GAGATGCCTTCCTTGGTC 12640600 Query 211023 TGGATCTT 211030 |||||||| Sbjct 12640601 TGGATCTT 12640608 >seq55 Length=9879816 Score = 89.7 bits (98), Expect = 1e-12 Identities = 114/155 (74%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || |||| || |||||||| |||| | ||| || |||||| Sbjct 2501350 AGGACCAGGTGCAGGGTTGACT--TTCTGGATGTTGTAATTAGAAAGTGTGAGGCCATCT 2501407 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAG-GAGGAACTCCTTCCTTGTC 211021 || ||||| ||| |||| ||||| || | || ||| | | || | || ||||| || Sbjct 2501408 TCTAGCTGTTTGACTGCAAAGATGAGCCTCTGCTGGCTGGTGGGGGATGCCGTCCTTATC 2501467 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAG 211056 |||||||||| ||||| || |||||||| |||| Sbjct 2501468 CTGGATCTTTGCCTTCACATTCTCGATGGTATCAG 2501502 >seq24 Length=14023012 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 210949 GGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 |||| | || || |||||||| | ||| ||||| | || || || |||||||| || | Sbjct 9383767 GGGTGCGGCCCTCATCCAGCTGTTCGCCCGCGAAACTCAGACGCTGCTGGTCAGGTGGGA 9383826 Query 211009 CTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068 || || ||||| | ||| || | | || || || |||||||| || ||||||| Sbjct 9383827 TGCCCTCTTTGTCTTTGATTTTAGCTCTGACATTCTCAGTGGTGTCACAGGGCTCAACCT 9383886 Query 211069 CGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGC 211112 |||| |||| ||||| ||||| || |||| ||||| || ||| Sbjct 9383887 CGAGGGTGAGGGTCTTGCCCGTCAGGCTCTTCACAAAGACGTGC 9383930 >seq180 Length=3735678 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||||||||| || | | || || | || || | ||||| |||||||| || || Sbjct 1580300 GTGGACTCTTTCTGAACATCGTAGTCTGACAGAGTGCGGCCATCCTCCAGCTGTTTCCCC 1580359 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 | ||| || || | || |||||||| | | | |||||||| | ||| || ||| Sbjct 1580360 GTGAAAATCAGATGCTGCTGGTCAGGTGAGATGACCTCCTTGTCTTAGATTTTAGCTTTG 1580419 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || | ||||||| | ||||||||||| ||||| |||| ||||| | ||| Sbjct 1580420 ACATTCTTATCAGTGTCAGTGGACTCAACCTCGAGGGTGATGGTCTGGCCCGTCGGGGTC 1580479 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | |||||| Sbjct 1580480 TTCACAAAAATCTGCAT 1580496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1155042181304625