Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq103000 118 7e-22 seq260794 102 5e-17 seq180 84.2 1e-11 seq182 82.4 5e-11 >seq103000 Length=415 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| || || ||||| || || ||||| ||||| || | Sbjct 403 ATGCAGATCTTTGTGAAAACCCTAACCGGGAAAACAATTACACTCGAGGTTGAGGCCTCC 344 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || ||| ||| ||||||||||| | || || ||||| Sbjct 343 GACACCATTGAAAATGTGAAGGCAAAGATTCAAGACAAAGAAGGAATCCCACCGGATCAG 284 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || |||| |||||||| || || ||||||| | ||||||| | |||||||| Sbjct 283 CAACGGCTAATCTTTGCCGGAAAGCAGTTGGAAGATGGACGCACTCTTTCTGATTACAAT 224 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || ||||| || || | || | ||| | | | ||||||||| Sbjct 223 ATCCAGAAAGAATCAACTCTTCACCTTGTTCTCCGTCTTCGAGGAGGA 176 Score = 109 bits (120), Expect = 4e-19 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || || || || |||||||| |||||||| ||||| || || | Sbjct 176 AATGCAGATCTTTGTGAAGACTCTGACTGGAAAAACAATCACTCTTGAAGTCGAGGCCTC 117 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | ||| | |||| || ||||| ||||| | || ||||||| Sbjct 116 AGACACAATCGAGAATGTGAAAGCCAAAA-TTCAAGACAAGGAAGGAATCCCACCAGATC 58 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG 23767 | ||||| | || ||||||||||| ||||| ||||||| Sbjct 57 AGCAGCGACTTATTTTTGCCGGCAAGCAACTAGAAGACG 19 >seq260794 Length=213 Score = 102 bits (112), Expect = 5e-17 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||||||||| | || |||||||| ||||| | || ||||| ||||||||||| ||| Sbjct 165 GACAAAGAAGGAATCCCCCCAGATCAGCAGCGACTGATCTTTGCTGGCAAACAACTCGAA 106 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 || | ||||||||| |||||||||||| || |||||||| || Sbjct 105 GATGGACGCACTTTGTCCGATTACAACATCCAGAAAGAGTCTAC 62 >seq180 Length=3735678 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||| ||||| | || ||||| ||||| ||||| ||||| Sbjct 1580496 ATGCAGATTTTTGTGAAGACCCCGACGGGCCAGACCATCACCCTCGAGGTTGAGTCCACT 1580437 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||||| | | ||| | ||| | |||| | ||||| || | | | || || || Sbjct 1580436 GACACTGATAAGAATGTCAAAGCTAAAATCTAA-GACAAGGAGGTCATCTCACCTGACCA 1580378 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || || | || ||||| ||||| || | |||||| | || ||| | Sbjct 1580377 GCAGCATCTGATTTTCACGGGGAAACAGCTGGAGGATGGCCGCACTCTGTCAGACTACGA 1580318 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 | || ||||||||||| || || | ||| Sbjct 1580317 TGTTCAGAAAGAGTCCACCTTGCACTCAGT 1580288 >seq182 Length=3864254 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||| | ||||| || || ||||| || || || || || Sbjct 2229398 AAAATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCC 2229457 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || || || ||||| | || || || Sbjct 2229458 AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGAC 2229517 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || || || ||||| || |||||||| | |||||| | ||||||| Sbjct 2229518 CAGCAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCCGATTAC 2229577 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 2229578 AACATCCAGAAGGAGTCGAC 2229597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336869633576300