Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq83363 158 3e-33 seq182 147 5e-30 seq103970 136 9e-27 seq260794 134 3e-26 seq276725 129 1e-24 seq299 114 3e-20 seq98 109 1e-18 seq103000 102 2e-16 seq150 93.3 1e-13 >seq83363 Length=456 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| ||||| || ||||| ||||||| ||||| || | | || | |||||| Sbjct 384 AGAACAAGATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGTCCATCT 325 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || ||||| || || || || || || ||||| |||||||||||| Sbjct 324 TCAAGCTGTTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCT 265 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||||||| ||||| || || |||| |||||| || || ||||| ||| Sbjct 264 TGAATTTTCGCCTTCACATTCTCGATTGTATCAGAGGCTTCCACTTCCAAAGTGATGGTC 205 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||| ||||||| ||| | |||||| Sbjct 204 TTCCCCGTCAAGGTTTTTACGAAAATTTGCAT 173 Score = 105 bits (116), Expect = 2e-17 Identities = 124/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || |||||||| || || || || ||||| | || ||||||| | || Sbjct 165 CGAAGACGGAGCACAAGGTGAAGGGTTGACTCCTTTTGAATGTTATAATCGGAGAGTGTA 106 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||||||| || ||||| || ||||| ||||| || ||||| || || ||||| ||| Sbjct 105 CGCCCATCTTCAAGTTGCTTTCCTGCGAAAATAAGACGCTGTTGATCAGGTGGAATTCCT 46 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGA 225656 |||||||| || || ||| || |||||| || ||||| || || Sbjct 45 TCCTTGTCCTGAAT-TTTCGCTTTCACATTCTCAATGGTATCAGA 2 >seq182 Length=3864254 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| || || || || || || || |||| |||||||||| | ||| | ||||| Sbjct 2229613 CAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATC 2229554 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || |||||||| || | || ||||| || || || |||||||| || Sbjct 2229553 TTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATC 2229494 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| ||||||||||| || ||||| || | ||||| || Sbjct 2229493 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 2229434 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||||||| || || | ||| | |||||||| Sbjct 2229433 CTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTT 2229398 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || || || || || || || |||| |||||||| | | ||| | |||||| Sbjct 2229840 AGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 2229781 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || | || ||||| || || || |||||||| || Sbjct 2229780 TCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCC 2229721 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 2229720 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 2229661 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 2229660 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2229629 >seq103970 Length=412 Score = 136 bits (150), Expect = 9e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || |||||||| |||||||| || || |||| |||||||||| || ||| Sbjct 190 ACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGAGT 131 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || | ||||| || ||||||||||| || || || || || || || || Sbjct 130 TCGGCCATCCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGGGATTCC 71 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || || ||||| ||||||| ||||||||||| |||| || || || | Sbjct 70 TTCCTTATCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCAGAGGCCTCAACCTCGAG 11 Query 225672 CGTGATCGTC 225681 ||||| ||| Sbjct 10 AGTGATGGTC 1 >seq260794 Length=213 Score = 134 bits (148), Expect = 3e-26 Identities = 130/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || || ||||||||||| || ||||| |||| |||||||||| |||||| Sbjct 37 ACGTAGTCGGAGAACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAATCGGACAAAGT 96 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || || || ||||| ||||| ||||| || || || || || || || Sbjct 97 GCGTCCATCTTCGAGTTGTTTGCCAGCAAAGATCAGTCGCTGCTGATCTGGGGGGATTCC 156 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGG 225658 ||| ||||| |||||||| |||||| ||| |||||||| |||| Sbjct 157 TTCTTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCAGAGG 203 >seq276725 Length=16652 Score = 129 bits (142), Expect = 1e-24 Identities = 133/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| | |||||||| || ||||||| || || |||||||| ||||||||| | ||||| Sbjct 5478 CCAAATCTACAACGTAGTTGTTACGGCCCACGCATTTGTTATAATTTTCTTTATAGTTAT 5537 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || | ||||| || || |||||||||||| | ||||||||||||||||| || || || Sbjct 5538 ACCAATCATGATCGGGGGCTTCGGAAATTGACTAGTTCCTTTAATGATTGGCGCACCAGA 5597 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 ||||| || || | | ||||| || || || || | ||||| || || || Sbjct 5598 CATGGCATTCCCCCGTATGAACAACATGAGCTTCTGGCTGCTACCCCCCTCATT 5651 >seq299 Length=1488728 Score = 114 bits (126), Expect = 3e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| | ||| ||||||||||| || |||| ||||| || | || || | |||||| Sbjct 453116 CAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 453175 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| |||||||| ||||| | | || ||||| || | || || || || || Sbjct 453176 TTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGAAGGATGCCCTCTTTTTC 453235 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||| | ||| ||| |||||||||||| || ||||| || | ||||| || Sbjct 453236 TTGGATCGTCCCCTTGACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 453295 Query 225681 CTT 225683 ||| Sbjct 453296 CTT 453298 >seq98 Length=6767347 Score = 109 bits (120), Expect = 1e-18 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 ||||||||| ||||| |||||||| ||||| | | || ||||| || || || || || Sbjct 4449260 CCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTC 4449201 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 || ||||||||||| ||| ||| |||||||||||| || ||||| || | || Sbjct 4449200 TTTTTCTTGGATCTTCCCCTTGACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGT 4449141 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| ||||| |||||||| || || | ||| | |||||| Sbjct 4449140 GATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATT 4449101 >seq103000 Length=415 Score = 102 bits (112), Expect = 2e-16 Identities = 120/160 (75%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || |||||||| ||||| || || || |||||||| || || || || || || |||||| Sbjct 18 CCGTCTTCTAGTTGCTTGCCGGCAAAAATAAGTCGCTGCTGATCTGGTGGGATTCCTTCC 77 Query 225616 TTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 |||||||| || ||| || |||||| ||||| |||||||||| || || || | || Sbjct 78 TTGTCTTGAAT-TTTGGCTTTCACATTCTCGATTGTGTCTGAGGCCTCGACTTCAAGAGT 136 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || || || |||| ||| || | || | |||||| Sbjct 137 GATTGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCATT 176 >seq150 Length=4498840 Score = 93.3 bits (102), Expect = 1e-13 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || ||||| || || || | |||||| || | || ||| | ||||| |||||||| Sbjct 34204 GTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGAGTGCGGCCATCCTCTAGCTG 34263 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || || | || || || | || || || || || || || |||||||||||||| || Sbjct 34264 TTTGCCCACAAAAATCAGACACTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGGAT-TT 34322 Query 225630 TTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 | || || ||| || |||||||| || || || || | ||||| |||||||||| Sbjct 34323 TAGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCCG 34382 Query 225689 TCA 225691 ||| Sbjct 34383 TCA 34385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1188303034047150