Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq240 300 1e-76 seq49 152 4e-32 seq6 91.5 1e-13 seq93 82.4 6e-11 >seq240 Length=2402814 Score = 300 bits (332), Expect = 1e-76 Identities = 451/647 (70%), Gaps = 4/647 (1%) Strand=Plus/Minus Query 29612 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAG 29671 ||||||| || || || | || ||||| || ||||||| || | ||| | | ||| Sbjct 1020332 GGAAAGGC-CTTGGTTCTCGCTGAAGCTGCATTTTCAGCGGCTCAATGTGATTCATGTAA 1020274 Query 29672 ACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29731 | ||| |||||||||| ||||| ||||| || || || | || || |||| ||| || Sbjct 1020273 ATGTGGGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCTGTGATGTGTGCA 1020214 Query 29732 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCC 29791 |||||||| ||||| || ||||||||||||||||| ||||||| || || |||||||| Sbjct 1020213 ATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCATGCCCAGGCCCATGTCT 1020154 Query 29792 CCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATG 29851 || |||| || ||| |||||||| || ||||| |||| |||||| ||||| || | | Sbjct 1020153 CCCGACCACTCGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAGG 1020094 Query 29852 GCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATG 29911 ||| |||| || || |||||| |||| | | ||||| || ||||||||||||| |||| Sbjct 1020093 GCAGGGCAGGGTGGGAGGGCCGTGAGCGCGAGATCTTTTGGATTCCAGGCACACATGATG 1020034 Query 29912 ATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACC 29971 | | ||||| | |||||| | |||| ||| | || |||||||| || || Sbjct 1020033 ACGATTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGCTGGTCTACT 1019974 Query 29972 CCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGG 30031 || || || || |||| | |||||||||||||| Sbjct 1019973 CCTTCGCCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGA 1019914 Query 30032 AACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAA 30091 || ||||| ||||| || || |||| || | ||| ||| ||| ||||||| Sbjct 1019913 AAGCCGTAAACCGGGCCTAGATCTC---CTGCTCTGGTGGAGAATCCCAGGCTGTCCAAG 1019857 Query 30092 AAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAG 30151 ||||||| ||| || ||||||||||||| || || ||||| || ||||| || | | Sbjct 1019856 AAGTCTCGGGACCCACTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCG 1019797 Query 30152 TTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 30211 |||||||| || ||| |||||||||| |||||| || | | ||| || || | Sbjct 1019796 TTTGTGGATCCCTTGATAAACCACAGCAATCCCTCCAAAACATCTTCCCAGAAAACACGT 1019737 Query 30212 TTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTCGCCTG 30258 ||||| ||||| || ||||| | | | |||| ||| | |||||| Sbjct 1019736 TTGGTTGTGAGCAGTGGAAATTCATCTCTCAGGCTGTAGCGCGCCTG 1019690 >seq49 Length=11369404 Score = 152 bits (168), Expect = 4e-32 Identities = 132/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || || |||||||||||||| |||||| Sbjct 7921594 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAATAGCTGGCGATGTTGAAGGGC 7921535 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || |||| |||||| |||||||| || ||||| |||| | Sbjct 7921534 ACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 7921475 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 ||||| ||||| || | ||| ||||| || || ||||||||||| Sbjct 7921474 ACGTAGAACTGGCAAAGGGCGTGGCAGGGCGGGAGGGCCATGAG 7921431 Score = 105 bits (116), Expect = 5e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||| || || ||||| ||||| || || ||||| ||||| ||| ||| Sbjct 7918365 AAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATCTCCTTCTTCTCTGGTGGAGAAT 7918306 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||| ||||||| ||| || |||||||||||||| || || ||||| Sbjct 7918305 CCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTCCCAGATTTTCACTCCCTTGGAA 7918246 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || ||||| || | ||||||||| || Sbjct 7918245 GACAGCTCCTTAGCGTTTGTGGATCC 7918220 >seq6 Length=20809404 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 11039913 TTGAGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 11039972 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| |||||||||||||| ||||||| ||||| |||||| Sbjct 11039973 ATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTCTGTTTACCT 11040020 >seq93 Length=6788731 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTC-TC 114320 ||||||||| || || || || | || || ||||| |||| || | ||||| | Sbjct 253572 ATGAGCTCCTTGTGGAGGTTCCTTGAATTCTCTACTGAGTACTAAATTAATTCTGTCCTT 253631 Query 114321 TCAGAGGTCTATT-CTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACG 114379 | | ||||| ||| ||| || || ||||||||||| ||||||||||| || ||||||| Sbjct 253632 TTAAAGGTCGATTTCTTCTCTGGAATGGAGAACCAGGTCTTTCTACCAATAATCACCAAA 253691 Query 114380 TTCTGCTTACCT 114391 ||||| |||||| Sbjct 253692 TTCTGTTTACCT 253703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404793379703350