Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq61 113 4e-20 seq149 107 2e-18 seq4 102 7e-17 seq37 93.3 4e-14 >seq61 Length=9284659 Score = 113 bits (124), Expect = 4e-20 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 31766 GCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCT 31825 || || || |||||||| ||||| || || | ||||| |||||||| | | || ||||| Sbjct 2016113 GCCCTTGTGAAAACCGACATTCAGATAGCTCTTCCTTCTGGGTGCTATGAAGGAGTAGCT 2016172 Query 31826 CCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCA 31885 || | || | ||||| | |||||||| || || || || || ||||| |||||| | Sbjct 2016173 CCACGTTCACGCTTGGCTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAA 2016232 Query 31886 GACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG--AGAAAAATCATACAGTA 31943 || || |||||||| ||||| |||| | ||||||||||| | |||| | | || Sbjct 2016233 GATTACAGAGGAAATGTTGGTGTTGTACTATTTAATTTTGGCAAAGAAAAGCTTGAAG-- 2016290 Query 31944 TAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 | |||||||| ||| | | || || || ||| | ||| Sbjct 2016291 TCAAAAAGGGTGATTGAATTGCACAGCTCATTCGTGAA 2016328 >seq149 Length=4484336 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| |||||||| || ||||| || ||||| || | || ||||| | ||||||||| | Sbjct 2319667 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCT 2319608 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | |||||||||||||| ||||| || || || ||||| || ||||| || || ||||| | Sbjct 2319607 TCAGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 2319548 Query 4690 CTAC 4693 | || Sbjct 2319547 CCAC 2319544 >seq4 Length=22931326 Score = 102 bits (112), Expect = 7e-17 Identities = 123/167 (74%), Gaps = 3/167 (2%) Strand=Plus/Minus Query 31769 CTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCT 31828 || || |||||| ||||| || |||| ||||| |||||||| ||| || |||||| Sbjct 13631370 CTTGTGAAAACCAGCATTCAGATAGCTTTCCCTTCTGGGTGCTATGGAGGAGCAGCTCCA 13631311 Query 31829 AGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGAC 31888 | || | ||||| | |||||||| || || || || || ||||| |||||| ||| Sbjct 13631310 TGTTCAGTCTTGGCTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGAT 13631251 Query 31889 TATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932 || |||||||| ||||| ||| | ||||||||||| |||||| Sbjct 13631250 TACAGAGGAAATGTTGGTGTTGCACTATTTAATTTTGGCAAAGAAAA 13631204 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| ||||| || ||||| || | || ||||| | |||| ||| || Sbjct 4287781 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCTTG 4287722 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || || | ||||| || ||||||||||| || ||||| || || ||||| ||| Sbjct 4287721 AGCCAGAAGATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCCGCAAAGGCT 4287662 Query 4692 AC 4693 || Sbjct 4287661 AC 4287660 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| || ||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 4284733 TCTTTAATGTAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 4284674 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | |||||||| | |||||||| Sbjct 4284673 ATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTC 4284630 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| || || || || || || |||||||||||||||||||| ||||| || ||| Sbjct 4285509 TCTTTAATGTAGGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 4285450 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | |||||||| | |||||||| Sbjct 4285449 ATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTC 4285406 >seq37 Length=12620877 Score = 93.3 bits (102), Expect = 4e-14 Identities = 103/137 (75%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 31799 CCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCAGTTAAACACTTTATC 31858 ||||| |||||||| ||| || ||| ||| | | | ||||| | |||||| | || Sbjct 8105047 CCTTCTGGGTGCTATGGAAGAGTAGTTCCATGTCCAGACTTGGCTGCAAAACACCTCATA 8104988 Query 31859 GACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGTTGGAATTGTGTTGTTT 31918 || || || || ||||| |||||| ||||||||||||||| ||||| |||| | ||| Sbjct 8104987 GATGTTGGAGCTGGTGTCATAGATGAAGACTATAGAGGAAATGTTGGTGTTGTACTATTT 8104928 Query 31919 AATTTTGG---AGAAAA 31932 |||||||| |||||| Sbjct 8104927 AATTTTGGCAAAGAAAA 8104911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425609338524425