Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq240 307 8e-79 seq49 138 8e-28 >seq240 Length=2402814 Score = 307 bits (340), Expect = 8e-79 Identities = 481/686 (70%), Gaps = 4/686 (1%) Strand=Plus/Minus Query 27106 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 27165 ||||||| || || || | || ||||| | |||||||| || | ||||| || ||| Sbjct 1020332 GGAAAGGC-CTTGGTTCTCGCTGAAGCTGCATTTTCAGCGGCTCAATGTGATTCATGTAA 1020274 Query 27166 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 27225 | ||| || ||||||| ||||| ||||| || || || | || || |||| ||| || Sbjct 1020273 ATGTGGGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCTGTGATGTGTGCA 1020214 Query 27226 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 27285 |||||||| ||||| || ||||||||||||||||| ||||| | || || |||||||| Sbjct 1020213 ATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCATGCCCAGGCCCATGTCT 1020154 Query 27286 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATG 27345 ||||||| || ||| ||||| || || ||||| || | ||||| ||||| || | | Sbjct 1020153 CCCGACCACTCGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAGG 1020094 Query 27346 GCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATG 27405 || |||| || || || ||| |||| | | ||||| || |||||||| |||| |||| Sbjct 1020093 GCAGGGCAGGGTGGGAGGGCCGTGAGCGCGAGATCTTTTGGATTCCAGGCACACATGATG 1020034 Query 27406 ATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACC 27465 | | ||||| | |||||| | |||| ||| | || |||||||| || || Sbjct 1020033 ACGATTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGCTGGTCTACT 1019974 Query 27466 CCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGG 27525 || || || || ||| ||| || |||| || || || ||||||||||| || Sbjct 1019973 CCTTCGCCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGA 1019914 Query 27526 AACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAA 27585 || ||||| ||||| || || |||| || | ||| ||| ||| ||||||| Sbjct 1019913 AAGCCGTAAACCGGGCCTAGATCTC---CTGCTCTGGTGGAGAATCCCAGGCTGTCCAAG 1019857 Query 27586 AAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAG 27645 ||||||| ||| || ||||||||||||| || || ||||| || ||||| || | | Sbjct 1019856 AAGTCTCGGGACCCACTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCG 1019797 Query 27646 TTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 27705 |||||||| || ||| |||||||||| |||||| || | | ||| || || | Sbjct 1019796 TTTGTGGATCCCTTGATAAACCACAGCAATCCCTCCAAAACATCTTCCCAGAAAACACGT 1019737 Query 27706 TTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACG 27765 ||||| ||||| || ||||| | | | |||| ||| | ||||| | ||||| Sbjct 1019736 TTGGTTGTGAGCAGTGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCTGAACACC 1019677 Query 27766 GACAAGACTCCCGTGCCCGTCCTGTC 27791 |||| | || |||||| | | ||| Sbjct 1019676 GACAGGGTGCCGGTGCCCATGCGGTC 1019651 >seq49 Length=11369404 Score = 138 bits (152), Expect = 8e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || || |||||||||||||| ||||| Sbjct 7921594 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAATAGCTGGCGATGTTGAAGGGC 7921535 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| ||||||| |||||| ||||| || || ||||| || | Sbjct 7921534 ACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 7921475 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | ||||||||| || || || |||||||| Sbjct 7921474 ACGTAGAACTGGCAAAGGGCGTGGCAGGGCGGGAGGGCCATGAG 7921431 Score = 118 bits (130), Expect = 8e-22 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| || || || |||||||||||||| || ||||| ||||| || || || Sbjct 7918387 CATATCTTTGTATTCGGCCCCAAAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATC 7918328 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||| ||||| ||| ||| ||| ||||||| ||||||| ||| || |||||||| Sbjct 7918327 TCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTC 7918268 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||| || || ||||| || ||||| || | ||||||||| || Sbjct 7918267 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 7918220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368261005213475