Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq39 127 3e-24 seq4 111 2e-19 seq149 93.3 6e-14 seq61 84.2 3e-11 >seq39 Length=12483156 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| | || Sbjct 4319055 TGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATTGAC 4318996 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||||||||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 4318995 TCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 4318936 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 4318935 TTTCTTATACCAT 4318923 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || ||||| || | || ||||| ||||| |||||||| || |||||||| || || Sbjct 4303362 AGTGCCAGCATTGAAGAGGGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTT 4303303 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 || ||||||||||| | || || || || ||||| || || | ||| | |||||| Sbjct 4303302 ATAAGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAA 4303243 Query 78518 CATATGCTGAGGTCTTTCAACC 78539 ||||||||| ||||| ||| || Sbjct 4303242 CATATGCTGTGGTCTCTCAGCC 4303221 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || || || | || | || Sbjct 4310635 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 4310576 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| |||||||| | || || ||||||| || Sbjct 4310575 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 4310516 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || || || ||||| | | |||||||| Sbjct 4310515 TCCAGGTAAATTGCAAATGCACCAGGTCG 4310487 >seq4 Length=22931326 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 || ||||| ||||| | ||| || ||||||||||| || ||||| ||||| || || ||| Sbjct 4287781 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCTTG 4287722 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| || |||| || ||||| ||||||||||| || ||||| || |||||||| || Sbjct 4287721 AGCCAGAAGATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCCGCAAAGGC 4287663 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/138 (76%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 ||| |||||| |||| || | |||| ||| ||| | || ||||| |||||||| | Sbjct 4289174 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTGGACATCACTCCCATCCT 4289115 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| || || || | ||||| || || ||||| || ||||||| ||| ||||| || Sbjct 4289114 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 4289055 Query 47912 CATAAAATCAAATGGATT 47929 |||||| ||||||||||| Sbjct 4289054 CATAAAGTCAAATGGATT 4289037 Score = 86.0 bits (94), Expect = 9e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 48391 TTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| |||||||| ||| ||||| || | |||||||||||||| || || || | Sbjct 4285520 TTTCTTTGGAATCTTTAATGTAGGTATCAATGAGGAGACTATACATTTCAGAATGTATGT 4285461 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 |||| || || || || || || || ||||| | |||||||| ||||| || || Sbjct 4285460 TTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTC 4285406 >seq149 Length=4484336 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||||||||| || || | ||| || ||||| ||||| || ||||| || || | || | Sbjct 2319667 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCT 2319608 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 | ||||||||||| || || ||||| || || ||||| || ||||| || || ||||| | Sbjct 2319607 TCAGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 2319548 Query 48283 C 48283 | Sbjct 2319547 C 2319547 >seq61 Length=9284659 Score = 84.2 bits (92), Expect = 3e-11 Identities = 236/354 (67%), Gaps = 20/354 (6%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||| ||| ||||| ||| ||||| | |||||||| |||||| ||| ||||| Sbjct 2016410 TCCAGGGGAACCAAAACCTCCTGAGC--CCCTTTCAGTGTCATCTAACACTTGATCTTCC 2016353 Query 45934 TTCAGATCAGGATAATATA-TACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATT 45992 | | || || ||| | | | |||| | || || || || |||| ||||||| | || Sbjct 2016352 TCTATTTCTGGGTAAAAAAATCCGTTCACGAATGAGCTGTGCAATTCAATCACCCTTTTT 2016293 Query 45993 TATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATC 46052 | ||||| | ||||| ||| ||| | || | || |||| | ||||| ||||| Sbjct 2016292 GACTTCAAGCTTTTCTTTGCCAAAATTAAATAGTACAACACCAACATTTCCTCTGTAATC 2016233 Query 46053 TTCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGG 46109 ||||||||| || || |||| ||||| || |||| || || | || | || Sbjct 2016232 TTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCGTGAACGTGG 2016173 Query 46110 AGCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCA 46165 ||||| || | |||| ||||| || | || ||| |||| || ||||| | || Sbjct 2016172 AGCTACTCCTTCATAGCACCCAGAA----GGAAGAGCTATCTGAATGTCGGTTTTCA-CA 2016118 Query 46166 ATCTCCTTTCTCCAGGAGGGAT--AGTATAGTCGTACGCACTGTATAAATCATA 46217 | || ||||||| | | ||| || || ||||| ||| |||| | ||||| Sbjct 2016117 AGGGCC-TTCTCCATGGGTGATGCTGTGTAATCGTAGGCATTGTACAGGTCATA 2016065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692265897204000