Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq39 132 7e-26 seq4 111 2e-19 seq149 107 3e-18 >seq39 Length=12483156 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| | || Sbjct 4319055 TGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATTGAC 4318996 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||||||||||| ||||||||||||||||| ||||| || || | | |||||| Sbjct 4318995 TCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 4318936 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 4318935 TTTCTTATACCAT 4318923 Score = 114 bits (126), Expect = 2e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || || || || || || || Sbjct 4298928 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGATG 4298869 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| |||| || || |||||||||||| Sbjct 4298868 GCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTAAT 4298809 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | |||||| || || |||| | ||||| || |||||||||| Sbjct 4298808 TCCACAGTAGTTACCCCACTATACAAGCCTTGGATTACTTTCATGG 4298763 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| || ||||| || | || ||||| ||||| || ||||| || |||||||| || || Sbjct 4303362 AGTGCCAGCATTGAAGAGGGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTT 4303303 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 || ||||||||| | || || ||||| || ||||| || |||| || | |||||| Sbjct 4303302 ATAAGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAA 4303243 Query 77113 CATATGCTGAGGTC 77126 ||||||||| |||| Sbjct 4303242 CATATGCTGTGGTC 4303229 >seq4 Length=22931326 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 || ||||| ||||| | ||| || ||||||||||| || ||||| ||||| ||||| ||| Sbjct 4287781 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCTTG 4287722 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| || || | || ||||| ||||||||||| || ||||| || ||||| || || Sbjct 4287721 AGCCAGAAGATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCCGCAAAGGCT 4287662 Query 46774 ACAA 46777 |||| Sbjct 4287661 ACAA 4287658 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || ||||| || | |||||||||||||| ||||| |||||||| || || Sbjct 4285510 ATCTTTAATGTAGGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 4285451 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 || || || || || ||||| | ||||| |||||||| || ||| Sbjct 4285450 AATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTCT 4285405 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| || ||||||||||| || || ||||| ||||| |||||||| | ||| |||||| | Sbjct 4283776 TACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATTTGCCAAATATCATG 4283717 Query 47187 ATATTGGATCGGAAAAATAACAAA 47210 ||||| ||| ||||| || ||||| Sbjct 4283716 ATATTCGATAGGAAAGATGACAAA 4283693 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || || || || | |||||||||||||| ||||| |||||||| || || Sbjct 4284734 ATCTTTAATGTAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 4284675 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 || || || || || ||||| | ||||| |||||||| || ||| Sbjct 4284674 AATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTCT 4284629 >seq149 Length=4484336 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| |||||||| || || | ||| | Sbjct 2319667 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCT 2319608 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | |||||||||||||| || ||||| || || ||||| || ||||| ||||| || || | Sbjct 2319607 TCAGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 2319548 Query 46772 CGAC 46775 | || Sbjct 2319547 CCAC 2319544 Score = 87.8 bits (96), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| |||||| | Sbjct 2311453 TACCTCTTCTGCTGTCCAGAAGGAGGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 2311394 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 || ||||| ||||| || ||||||| Sbjct 2311393 GTACTGGATTGGAAAGATGACAAATC 2311368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710468315352000