Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_031039.1 Length=251042 Score E Sequences producing significant alignments: (Bits) Value seq374 123 4e-23 >seq374 Length=747316 Score = 123 bits (136), Expect = 4e-23 Identities = 319/480 (66%), Gaps = 26/480 (5%) Strand=Plus/Plus Query 190820 CGTACATAGTAAAGACTCTTTAAACCACGTTTATTGGCATAATACATAT---GACCAACT 190876 ||||||||||||||| ||| ||||| |||| | | ||||| || ||| |||| Sbjct 667591 CGTACATAGTAAAGAGACTTCAAACCC---TTATGGTGAGCATACAAATACAGACGAACT 667647 Query 190877 AATTGATCT----GTAGGGATATCACTATTGACAAATAAAGTAGTAGAAATACCCTGATC 190932 || | ||| |||| | | | || | ||| | ||| |||| ||||| |||||||| Sbjct 667648 AAGTC-TCTAGTAGTAGAGTTGT---TAGTTACATACAAAATAGTCGAAATTCCCTGATC 667703 Query 190933 AATATGTTGTTGGATTACTGCAACCATGTCAATAATTTTATTTTGATCCATATCATATGC 190992 || || | || || || ||| | ||| || | || |||||||| ||||| || || Sbjct 667704 TATGTGATTCTGAATAACAGCAGATAGGTCTATCAGCTTTTTTTGATCAATATCGTAGGC 667763 Query 190993 TGATTTGTAA----GACCATTGAGTTCTACCGTCTAGATATGGCATTGGATAGTATGTTG 191048 || ||||| || |||| || | | |||||| ||||| ||| |||| || Sbjct 667764 AGACTTGTATAGGTGAGCATTCTCTTTT----TTTAGATAAGGCATAGGAAAGTAGGTCA 667819 Query 191049 TAGAGTCATGATATGTTCTGTTTTCAATTCGACTTACAACTGGCATAATAGATTGAGTTG 191108 |||||| ||| |||| |||| || || | || ||| |||||| ||| | Sbjct 667820 TAGAGTTCCCATACATTCTCGTTTCTATAGGAGAGATAATAGGCTGAATAGAAGCAGTAG 667879 Query 191109 AATTCTGTACATAACTAATTGACTGTGTAGGTGCAATAGCAAGTCTATAAGCATGGTATA 191168 ||||| ||| ||||| ||| ||||| || ||||||||||||||||||| ||| | Sbjct 667880 CTCCCTGTAGATAGCTAATGCTCTGAGTAGGAGCTATAGCAAGTCTATAAGCATTGTAGA 667939 Query 191169 AACCATTTTCTTTTACTTGTTCTGCTAATTCAGCCCAATCTTCTTTTGTTGGAA--CAAA 191226 |||| || || |||| || ||| || |||||||| ||||| | | Sbjct 667940 TCCCATCTTGCTTGACTTTCTCCCTTAAGGACTTTCAGTCTTCTTTAGTTGGTAGTTTTA 667999 Query 191227 GATTCCCTCAAATAATTCTTTTACTTTTTGACTTCTAGGTGTATAATCATTTTCGATATA 191286 | | ||| || |||||||| || ||| ||| ||||| ||| ||||| || | ||| Sbjct 668000 GGTGACCT--AACAATTCTTTGACCTTTGCACTCTTAGGTAGATAGTCATTCTCTAGATA 668057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 800428058862000