Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq182 138 3e-27 seq103000 125 2e-23 seq103970 120 7e-22 seq83363 107 4e-18 seq260794 102 2e-16 seq98 93.3 1e-13 >seq182 Length=3864254 Score = 138 bits (152), Expect = 3e-27 Identities = 162/218 (74%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| || || ||||| || |||||||||||||||| | ||| | |||||| Sbjct 2229612 AGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCT 2229553 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| |||||||||||||| | | ||| |||||||| || Sbjct 2229552 TCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCC 2229493 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || || || || || Sbjct 2229492 TGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 2229436 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || |||||||| | ||||||||||||| ||||||||| Sbjct 2229435 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTT 2229398 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||| ||||| || || ||||| || |||||||||||||| | | ||| Sbjct 2229850 CCTCAGACGGAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGT 2229791 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || |||||||| |||||||||||||| | | ||| || Sbjct 2229790 GCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCC 2229731 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || || || |||| | | |||| ||| || || || Sbjct 2229730 TTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAG 2229671 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || || ||||||||||||| |||||| Sbjct 2229670 GGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2229629 >seq103000 Length=415 Score = 125 bits (138), Expect = 2e-23 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || |||||||| || ||||| || ||||| | |||||| || | | |||||||||| Sbjct 18 CCGTCTTCTAGTTGCTTGCCGGCAAAAATAAGTCGCTGCTGATCTGGTGGGATTCCTTCC 77 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||||||||| ||| ||| |||| | ||||||| ||| ||||||||||| Sbjct 78 TTGTCTTGAATTTTGGCTTTCACATTCTCGATTGTGTCTGAGGCCTCGACTTCAAGAGTG 137 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || ||||||||||| |||| ||||||| Sbjct 138 ATTGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCATT 176 >seq103970 Length=412 Score = 120 bits (132), Expect = 7e-22 Identities = 137/182 (75%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||| |||||||| ||||| || |||||||||||||||| | ||||| ||||| Sbjct 181 GAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGAGTTCGGCCATC 122 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || | ||||| |||||||||||||| | |||||| || | | |||||||||||| Sbjct 121 CTCCAATTGCTTT--CCGGCGAAGATAAGACGCTGCTGATCAGGAGGGATTCCTTCCTTA 64 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || ||||| || || ||| |||| | | |||| || ||| || || ||||| || Sbjct 63 TCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCAGAGGCCTCAACCTCGAGAGTGATG 4 Query 152070 GT 152071 || Sbjct 3 GT 2 >seq83363 Length=456 Score = 107 bits (118), Expect = 4e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| |||||||| || || || || |||||||||||||| || | | || | Sbjct 391 GAGACGGAGAACAAGATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAGAGGGTACG 332 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || ||| ||||| ||||| || | |||||| || | | |||||||| Sbjct 331 TCCATCTTCAAGCTGTTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTC 272 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||||||||| || ||| |||| | | || || || ||||| | ||| Sbjct 271 CTTGTCTTGAATTTTCGCCTTCACATTCTCGATTGTATCAGAGGCTTCCACTTCCAAAGT 212 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| | || || ||||| | ||||| Sbjct 211 GATGGTCTTCCCCGTCAAGGTTTTTACGAAAATTTGCAT 173 Score = 96.9 bits (106), Expect = 8e-15 Identities = 110/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||| ||||| || ||||| ||||| ||||| ||||||| | || | |||||| Sbjct 157 GAGCACAAGGTGAAGGGTTGACTCCTTTTGAATGTTATAATCGGAGAGTGTACGCCCATC 98 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||| || ||||| || ||||| ||||| | ||| || || | | ||||||||||| Sbjct 97 TTCAAGTTGCTTT--CCTGCGAAAATAAGACGCTGTTGATCAGGTGGAATTCCTTCCTTG 40 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTC 152035 || |||||||| ||| ||| |||| Sbjct 39 TCCTGAATTTTCGCTTTCACATTCTC 14 >seq260794 Length=213 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||| || || || |||||||||||||| |||||||||||||||| ||||| | Sbjct 41 AGTCGGAGAACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAATCGGACAAAGTGCGT 100 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || || ||||| || | |||||| || | | ||||||||| Sbjct 101 CCATCTTCGAGTTGTTTGCCAGCAAAGATCAGTCGCTGCTGATCTGGGGGGATTCCTTCT 160 Query 152007 TTTTCTTGAATTTT 152020 || || || || || Sbjct 161 TTGTCCTGGATCTT 174 >seq98 Length=6767347 Score = 93.3 bits (102), Expect = 1e-13 Identities = 119/163 (73%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||||||| || |||||| || ||||| | |||||||||||| | | ||| || || Sbjct 4449260 CCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTC 4449201 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAG 152062 |||||||| || || |||||| | || | | |||| ||| ||| || || || Sbjct 4449200 TTTTTCTTGGATCTTCCCCTTGACATTTTCGATGGTGTC---ACTGGGCTCCACCTCCAG 4449144 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || ||||| | ||||||||||||| ||||||| Sbjct 4449143 GGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATT 4449101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149729883282475