Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq182 136 3e-27 seq83363 118 8e-22 seq103000 113 3e-20 seq98 109 4e-19 seq103970 104 2e-17 seq299 93.3 3e-14 seq150 86.0 4e-12 seq260794 84.2 2e-11 >seq182 Length=3864254 Score = 136 bits (150), Expect = 3e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||||| || || || |||||| |||||||||||||| Sbjct 2229631 CATACCACCCCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATC 2229572 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| || || ||||| | | |||||| || | Sbjct 2229571 GGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGG 2229512 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| ||||| |||| | |||||||| || | Sbjct 2229511 GGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCAC-GTTCTCGATGGTGTCACTGGGCT 2229453 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || ||||| ||||| | ||||||||||||||| ||||| Sbjct 2229452 CCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2229401 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | ||||| || || || |||||| |||||||||||||| | Sbjct 2229855 CCACCCCTCAGACGGAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 2229796 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || || ||||| | | |||||| || | ||| Sbjct 2229795 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGG 2229736 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | |||||||| ||| ||||| ||||| |||| | ||||||||| || ||||| Sbjct 2229735 ATGCCTTCCTTATCCTGGATCTTGGCCTTCAC-GTTCTCGATGGTGTCGCTGGGCTCCAC 2229677 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || ||||| || || ||||||||||||||||| ||||| Sbjct 2229676 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2229629 >seq83363 Length=456 Score = 118 bits (130), Expect = 8e-22 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || | | || || || || || ||||||||||||||||| Sbjct 406 TTGCATTCCTCCTCGGAGACGGAGAACAAGATGGAGGGTTGATTCCTTTTGGATGTTGTA 347 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | ||| || | || || ||||| || ||||||||||| | |||||||||||| Sbjct 346 GTCAGAGAGGGTACGTCCATCTTCAAGCTGTTTTCCGGCAAAGATGAGACGCTGCTGATC 287 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | |||||||| || || ||| ||||| | | || || || | || Sbjct 286 TGGTGGAATTCCTTCCTTGTCTTGAATTTTCGCCTTCACATTCTCGATTGTATCAGAGGC 227 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||| |||| || || ||||| ||||| | ||| || ||||| ||||||||| Sbjct 226 TTCCACTTCCAAAGTGATGGTCTTCCCCGTCAAGGTTTTTACGAAAATTTGCATG 172 >seq103000 Length=415 Score = 113 bits (124), Expect = 3e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| |||| || | | || |||||||| || || || ||||| |||||||| Sbjct 173 CATTCCTCCTCGAAGACGGAGAACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATC 232 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || |||| |||||| ||||||||||| | || |||||||| | Sbjct 233 AGAAAGAGTGCGTCCATCTTCCAACTGCTTTCCGGCAAAGATTAGCCGTTGCTGATCCGG 292 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||| || || ||||| ||||| || | |||||||||| || || Sbjct 293 TGGGATTCCTTCTTTGTCTTGAATCTTTGCCTTCACATTTTCAATGGTGTCGGAGGCCTC 352 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | ||||| || || || || ||||| ||||| ||||| |||||| Sbjct 353 AACCTCGAGTGTAATTGTTTTCCCGGTTAGGGTTTTCACAAAGATCTGCATG 404 >seq98 Length=6767347 Score = 109 bits (120), Expect = 4e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || |||||||| ||||| ||||||||||| | |||||| |||| || | || || ||| Sbjct 4449256 TCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTT 4449197 Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 || |||||| ||| | || | |||||||| || |||||||||| || || Sbjct 4449196 TCTTGGATCTTCCCCTTGACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 4449137 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| | ||||||||||||||| ||||| Sbjct 4449136 GTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 4449102 >seq103970 Length=412 Score = 104 bits (114), Expect = 2e-17 Identities = 133/180 (74%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCG 44185 ||| |||||||| ||| |||||| |||||||||||||||| ||||| | || | || Sbjct 178 CACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGAGTTCG-GC-CATCC 121 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| ||||| ||||| ||||| | |||||||||||| | ||| | |||||||| ||| Sbjct 120 TCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGGGATTCCTTCCTTATCC 61 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||||| | | |||||||| | || || ||||| | || || ||| Sbjct 60 TGAATCTTGGCCTTCACATTCTCGATGGTGTCAGAGGCCTCAACCTCGAGAGTGATGGTC 1 >seq299 Length=1488728 Score = 93.3 bits (102), Expect = 3e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||| ||||| ||||||||||| || | || |||| | || ||| Sbjct 453120 ACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 453179 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| ||||| ||||||||||| | |||||| |||| | | | || || ||||| Sbjct 453180 AGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGAAGGATGCCCTCTTTTTCTTGG 453239 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||| || ||| | || | |||||||| || |||||||||| || || ||||| Sbjct 453240 ATCGTCCCCTTGACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 453298 >seq150 Length=4498840 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| | ||| || ||| |||||| || || ||||| || | || ||| | || || Sbjct 34198 CACTAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGAGTGCGGCCATCCTC 34257 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||| || || |||| |||| || ||||||||| | || | || ||||| || Sbjct 34258 TAGCTGTTTGCCCACAAAAATCAGACACTGCTGATCAGGTGGGATGCCCTCCTTGTCTTG 34317 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || || |||| | ||| | |||||||| || || ||||| | || || |||| Sbjct 34318 GATTTTA-GCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCT 34376 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| ||||||||||| ||||| ||||| Sbjct 34377 TGCCCGTCAGGGTCTTCACAAAGATCTGCAT 34407 >seq260794 Length=213 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | |||| | |||||||| || || ||| || |||||||||||||| Sbjct 28 CATTCCACCACGTAGTCGGAGAACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAATC 87 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | ||| | || || || || || || |||||||||| ||||||||||||| Sbjct 88 GGACAAAGTGCGTCCATCTTCGAGTTGTTTGCCAGCAAAGATCAGTCGCTGCTGATCTGG 147 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTC 44277 || | ||||| || ||| ||||| ||||| || | |||||||| Sbjct 148 GGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTC 198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358776301439325