Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq14 165 1e-35 seq53 87.8 3e-12 >seq14 Length=17206968 Score = 165 bits (182), Expect = 1e-35 Identities = 171/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| |||| ||| |||||||||||| || || ||||| ||||| ||||| Sbjct 6320914 GTCTGGAACAACCGCTCATCATCCCATTCTGGATGCTCCTGCTTCAGCACATCACACACT 6320855 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| |||||||| |||||||||||||| || ||||| ||||| ||||| Sbjct 6320854 CTGTTGTGTTCCCGCAGCCAGATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 6320795 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 ||| || || ||||| | ||| || ||| || || | ||||| |||||||| | Sbjct 6320794 AGCTCCTGCCCCACAGCAAACTGCAGGTGTTCAGGAACATGAGGAGGGTAGATCATCTCG 6320735 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479 ||||| |||||||| | || ||||||| || || |||| Sbjct 6320734 ACCTGAGTATCTTTGACTGTTGGAGGATACACCTCTCCACCAAT 6320691 Score = 120 bits (132), Expect = 4e-22 Identities = 209/304 (69%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| | || || ||||| || || || || | |||| ||||||||||| | Sbjct 6322432 GAACACTGAATGAGGTAAAAGGACAGCCTTTCACATTATTGCAGATGAGAGACTGAATTG 6322373 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| ||| || || || ||||| || || |||||||||||||||||| Sbjct 6322372 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTGGGCTTCCAGTACT 6322313 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || || || || || |||| || ||||| | |||||| || || || || | Sbjct 6322312 CAGGAGAACATATAGGATTACCCATCAGTCCTTTCAAGGAGAATGGTGCTCCAGCTTCTA 6322253 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| |||| || |||||||| | ||||| |||||||| |||| | | | |||| Sbjct 6322252 CCATGGTCTCCCCAAAGATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACA 6322193 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 | |||| | || | ||| || || || || | || ||||| || ||||| |||| Sbjct 6322192 GTTCCATGACATCAATGTCACCATAGAGTGCTTCTAACTCTGCAGCCATTTCCTTCTCTC 6322133 Query 8583 CTGT 8586 |||| Sbjct 6322132 CTGT 6322129 Score = 116 bits (128), Expect = 5e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||| ||||| || || |||||| ||| ||| | || Sbjct 6319816 TCTTACCCCATGGTTCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 6319757 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 6319756 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 6319697 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 || |||| | || | ||||| |||||||||||| | | | ||| || |||| Sbjct 6319696 AGGGATGAACTTTCTTCTCAGAAGTAATTTTTCCACAACTTCTTTTGAATCAGGAAGCTC 6319637 Query 9829 TGTTTTACCTGGTGAACGAGAA 9850 | | | |||| || ||||| Sbjct 6319636 TTTCCTCCCTGAAAAATGAGAA 6319615 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | || ||||| || |||| || || ||||| ||| |||| Sbjct 6319300 TCACCTTTCACACCCATGGGTGTTGGGCAGTCGTCAGCCACAGGAGGAAGAGCTCTTGTA 6319241 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 |||||||||||||| || || |||||||||||| || | |||| || || || | Sbjct 6319240 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGTGCATTATAAGTT 6319181 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || ||||||||||||| || ||||| |||| Sbjct 6319180 GGTGGGCTGTCAATCAGATTTGATCTTGCTGA 6319149 >seq53 Length=10547686 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/141 (74%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 9647 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 9704 || || ||||| || |||| | | || |||||| | || || || |||| | ||| Sbjct 7158753 GTACTCACCCCGTGGCCCAATGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTT 7158810 Query 9705 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 9764 | || |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| |||| Sbjct 7158811 TGAAGAACTGGTGTGTGAAGTGTTGCGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGG 7158870 Query 9765 GATCGGGAGTGAAGGTCCTCC 9785 | || || |||| |||||| Sbjct 7158871 GGTCAGGTATGAACTTCCTCC 7158891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714397078344000