Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq103000 185 2e-41 seq182 163 7e-35 seq83363 161 2e-34 seq103970 147 5e-30 seq260794 134 3e-26 seq299 109 1e-18 seq98 107 5e-18 seq150 102 2e-16 >seq103000 Length=415 Score = 185 bits (204), Expect = 2e-41 Identities = 165/207 (80%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| || || || ||||| || || |||||||| || ||| ||| Sbjct 400 CAGATCTTTGTGAAAACCCTAACCGGGAAAACAATTACACTCGAGGTTGAGGCCTCCGAC 341 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||||||| ||||||||||||||||| ||||| |||||| Sbjct 340 ACCATTGAAAATGTGAAGGCAAAGATTCAAGACAAAGAAGGAATCCCACCGGATCAGCAA 281 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||| ||| | ||||||||| | |||||| | ||||| || || Sbjct 280 CGGCTAATCTTTGCCGGAAAGCAGTTGGAAGATGGACGCACTCTTTCTGATTACAATATC 221 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || ||||||||||| || || |||||| Sbjct 220 CAGAAAGAATCAACTCTTCACCTTGTT 194 Score = 131 bits (144), Expect = 4e-25 Identities = 131/170 (77%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||||| || |||||||| ||||| || || || || ||||||| Sbjct 172 CAGATCTTTGTGAAGACTCTGACTGGAAAAACAATCACTCTTGAAGTCGAGGCCTCAGAC 113 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| || ||||| ||||| ||||||||||| || || ||||| Sbjct 112 ACAATCGAGAATGTGAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCAGATCAGCAG 53 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGA 178093 |||||||| || ||||| || || || ||||| || | || ||| |||| Sbjct 52 CGACTTATTTTTGCCGGCAAGCAACTAGAAGACGGCCGTACCCTTTCCGA 3 >seq182 Length=3864254 Score = 163 bits (180), Expect = 7e-35 Identities = 171/222 (77%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || |||||||| || | || || || || |||||||| |||| Sbjct 2229393 AGGTCAAAATGC---AGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGG 2229449 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||||||||| || ||||| ||||| || ||||| || Sbjct 2229450 TGGA--GCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 2229507 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | || |||||||| || || ||||| |||||||| | ||||| Sbjct 2229508 CCCCCCTGACCAGCAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCT 2229567 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | ||||||| ||| |||| || || || || |||||||| || Sbjct 2229568 TTCCGATTACAACATCCAGAAGGAGTCGACCCTGCATCTGGT 2229609 Score = 163 bits (180), Expect = 7e-35 Identities = 162/208 (78%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 2229632 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 2229689 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| |||||||| ||||||| Sbjct 2229690 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAGC 2229749 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| |||||||| | |||||| | ||||| ||| Sbjct 2229750 AGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 2229809 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || |||||||| || Sbjct 2229810 TCCAGAAGGAGTCGACCCTGCATCTGGT 2229837 >seq83363 Length=456 Score = 161 bits (178), Expect = 2e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || || || || ||||| | || |||||| ||| || Sbjct 176 CAAATTTTCGTAAAAACCTTGACGGGGAAGACCATCACTTTGGAAGTGGAAGCCTCTGAT 235 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || || ||||| ||||| |||||||| || || || ||||| Sbjct 236 ACAATCGAGAATGTGAAGGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAGCAG 295 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||||||||| ||||||||| | || || | || || ||| || Sbjct 296 CGTCTCATCTTTGCCGGAAAACAGCTTGAAGATGGACGTACCCTCTCTGACTACAACATC 355 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| |||||||| || ||||||||| Sbjct 356 CAAAAGGAATCAACCCTCCATCTTGTT 382 Score = 116 bits (128), Expect = 9e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 || || ||||| ||||| || ||| || ||||||||||| |||||||| || || || Sbjct 2 TCTGATACCATTGAGAATGTGAAAGCGAAAATTCAGGACAAGGAAGGAATTCCACCTGAT 61 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 || || || ||||| ||||| ||||| || || |||||||| | || || |||||||| Sbjct 62 CAACAGCGTCTTATTTTCGCAGGAAAGCAACTTGAAGATGGGCGTACACTCTCCGATTAT 121 Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||| | ||||| || ||||| || || ||||| Sbjct 122 AACATTCAAAAGGAGTCAACCCTTCACCTTGT 153 >seq103970 Length=412 Score = 147 bits (162), Expect = 5e-30 Identities = 138/176 (78%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 177954 ACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAG 178013 || ||||| |||||||| || ||| |||||||||||||| || || ||||||||| Sbjct 2 ACCATCACTCTCGAGGTTGAGGCCTCTGACACCATCGAGAATGTGAAGGCCAAGATTCAG 61 Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 || || |||||||||||||| || ||||| || ||||||||||||||||| || | || Sbjct 62 GATAAGGAAGGAATCCCTCCTGATCAGCAGCGTCTTATCTTCGCCGGAAAGCAATTGGAG 121 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||| | ||||| ||||||| ||| |||| || || || || || || ||||| Sbjct 122 GATGGCCGAACTCTGTCCGATTACAACATCCAGAAGGAGTCCACTCTTCACCTTGT 177 >seq260794 Length=213 Score = 134 bits (148), Expect = 3e-26 Identities = 127/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 177977 CTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGA 178036 ||| |||||||| || ||||| || ||||| |||||||||||||||||||| || || Sbjct 202 CTCTGACACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGA 143 Query 178037 CCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 ||||| ||||| ||||| || || ||||| |||||||||||| | ||| | ||||||| Sbjct 142 TCAGCAGCGACTGATCTTTGCTGGCAAACAACTCGAAGATGGACGCACTTTGTCCGATTA 83 Query 178097 TAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||| |||| ||||| || || || || || ||| | |||| Sbjct 82 CAACATCCAGAAAGAGTCTACTCTCCACCTGGTTCTCCGACT 41 >seq299 Length=1488728 Score = 109 bits (120), Expect = 1e-18 Identities = 134/180 (74%), Gaps = 5/180 (3%) Strand=Plus/Minus Query 177951 AAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGA 178008 || || |||||||| |||||||| || ||| |||||||||| || ||||| | || Sbjct 453298 AAGACCATCACCCTGGAGGTGGA--GCCCAGTGACACCATCGAAAATGTCAAGGGGACGA 453241 Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068 | || || ||||| || |||| ||| |||||||| | | ||||| || || ||||||| Sbjct 453240 TCCAAGAAAAAGAGGGCATCCTTCCAGACCAGCAGAGGTTGATCTTTGCTGGGAAACAGC 453181 Query 178069 TCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 | |||||||| | || || | || || ||| |||| || ||||| || ||||| |||| Sbjct 453180 TGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAATCCACTCTGCA-CTTG 453122 >seq98 Length=6767347 Score = 107 bits (118), Expect = 5e-18 Identities = 119/157 (76%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 4449105 CAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 4449162 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| || ||||| ||||| || || ||||| || ||||| || ||||||| Sbjct 4449163 ACACCATCGAAAATGTCAAGGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCAGACCAGC 4449222 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 | | | ||||| || || |||||||| |||||||| Sbjct 4449223 AGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGG 4449259 >seq150 Length=4498840 Score = 102 bits (112), Expect = 2e-16 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || || || |||||||||||||| | ||| || | Sbjct 34404 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 34347 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| |||||| || || || ||||| || || ||||| || || |||| Sbjct 34346 ACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGATCAGC 34287 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || | || |||||||| || ||||| | ||||| | || || || Sbjct 34286 AGTGTCTGATTTTTGTGGGCAAACAGCTAGAGGATGGCCGCACTCTGTCAGACTACAATA 34227 Query 178102 TCCAAAAAGAATCAACACTGCA 178123 | || || || || || ||||| Sbjct 34226 TTCAGAAGGAGTCCACCCTGCA 34205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1199463324009650