Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq182 132 4e-26 seq83363 100 3e-16 seq150 100 3e-16 seq180 82.4 7e-11 >seq182 Length=3864254 Score = 132 bits (146), Expect = 4e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||||||||| || ||||||||| ||||| || ||||| || ||||| Sbjct 2229618 AGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGG 2229559 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| || || | ||| ||||| | ||| | || ||| Sbjct 2229558 CCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCC 2229499 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | ||||| || | ||||||||||| || Sbjct 2229498 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 2229439 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || ||||||| ||||| ||||| |||||||| || Sbjct 2229438 ATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTT 2229398 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||||||||| || ||||||||| ||||| || || Sbjct 2229859 ACAGCCACCCCTCAGACGGAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAATC 2229800 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| | || || ||||||||||| ||||| || || | ||| ||||| | Sbjct 2229799 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGG 2229740 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 || | || ||||| ||| ||| || ||||| | | |||||||| | ||| Sbjct 2229739 AGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTC 2229680 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || || ||||| ||||| ||||| |||||||| Sbjct 2229679 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2229629 >seq83363 Length=456 Score = 100 bits (110), Expect = 3e-16 Identities = 113/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||| || || || || |||||| ||||||||||| ||||| Sbjct 172 GCCTCCTCGAAGACGGAGCACAAGGTGAAGGGTTGACTCCTTTTGAATGTTATAATCGGA 113 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || ||| | || || || ||||| || ||||| || || |||||||| || | || Sbjct 112 GAGTGTACGCCCATCTTCAAGTTGCTTTCCTGCGAAAATAAGACGCTGTTGATCAGGTGG 53 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT 41784 || | ||||||||| ||| |||| |||| Sbjct 52 AATTCCTTCCTTGTCC-TGAATTTTCGCTT 24 >seq150 Length=4498840 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 41660 TGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGC 41719 ||||| ||| |||||||||||| || ||||| || || ||||| | || || ||||| Sbjct 34205 TGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGAGTGCGGCCATCCTCTAGCTGT 34264 Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTT 41779 ||||| | || ||||| | ||| || || | || | || |||||||| | || |||| Sbjct 34265 TTGCCCACAAAAATCAGACACTGCTGATCAGGTGGGATGCCCTCCTTGT-CTTGGATTTT 34323 Query 41780 TGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGT 41838 |||| || | | ||||| || | ||| ||||| | || || || || ||||| Sbjct 34324 AGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCCGT 34383 Query 41839 CAGCGTCTTTACGAAAATCTGCAT 41862 ||| ||||| || || |||||||| Sbjct 34384 CAGGGTCTTCACAAAGATCTGCAT 34407 >seq180 Length=3735678 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| | ||||| | ||| |||| ||| ||| ||||||| | ||||| || Sbjct 1580269 GCCGCCTCCCAGACGAAGCACTGAGTGCAAGGTGGACTCTTTCTGAACATCGTAGTCTGA 1580328 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||| || || | ||| ||||| |||| ||||| | | Sbjct 1580329 CAGAGTGCGGCCATCCTCCAGCTGTTTCCCCGTGAAAATCAGATGCTGCTGGTCAGGTGA 1580388 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACA-CAGTGTCGCTCGACTCCA 41813 | | ||||||||| |||||| |||| || | ||||||| | ||||| | Sbjct 1580389 GATGACCTCCTTGTCTTAGATTTTA-GCTTTGACATTCTTATCAGTGTCAGTGGACTCAA 1580447 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || | |||||| | ||||| || ||||||||||| Sbjct 1580448 CCTCGAGGGTGATGGTCTGGCCCGTCGGGGTCTTCACAAAAATCTGCAT 1580496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460704861570000