Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3 102 2e-16 seq2 93.3 9e-14 seq9 84.2 5e-11 seq1 84.2 5e-11 >seq3 Length=527952102 Score = 102 bits (112), Expect = 2e-16 Identities = 257/381 (67%), Gaps = 16/381 (4%) Strand=Plus/Minus Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148 ||||| |||||| |||||| ||||||||||| |||||||| || |||| || | || Sbjct 6185141 CAAGCCTCAACAAATGAACTTTATGGAAAAGTACAAGAAATACCACAAAAGGAGACTACC 6185082 Query 61149 CCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGA-TTTGTAA 61207 | |||||| || || ||||| | |||||||| || ||| |||||| | || Sbjct 6185081 ACTTTTTATGTTCTGTCACCATATGGAGCAGCAAAACTTTATGCTAACTGGACTGTGGTG 6185022 Query 61208 AAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCG-ATTTGTTTCAATCACGAGA 61266 || || || ||| | || |||||| ||| | | | ||| ||||||||| |||| Sbjct 6185021 AACTT-CCCTGAGACCTACAACCTGTTTG-CTGTGAATGGCATTCTTTTCAATCATGAGA 6184964 Query 61267 GTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATTT 61326 |||||| ||||| | | ||||| ||||| ||||| | || | || || || Sbjct 6184963 GTCCCAGAAGAGGGGCTAATTTTGTAACTCGAAAAATCAGCCAGTCTGTAGC---TAGGA 6184907 Query 61327 TTAACGGTGTCGAAAAATGCA-TGTATC----TAGGAAACATAGACTCTAAAAGAGATTG 61381 || || || || || || | ||| || | || || || | || ||||||| Sbjct 6184906 TTCACCTTG--GACAATTGGAGTGTTTCAGTTTGGGGAATCCGGATGCCAAGCGAGATTG 6184849 Query 61382 GGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGA 61441 ||| |||| | |||||| | |||||| ||||| | |||||||| ||| ||||| Sbjct 6184848 GGGCCATGCCAAGGATTATGTTGAGGCTCTGTGGCTAATGTTGCAGACTGATGAGCCAGA 6184789 Query 61442 TGACTACGTTATTGCGACTGG 61462 |||| || ||| |||||| Sbjct 6184788 AGACTTTGTCATT--GACTGG 6184770 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 447654023 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 447654082 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 447654083 CCCACGTTGGGC 447654094 >seq2 Length=541556283 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 || |||||| ||||||||||||||||||| ||||| ||||||| |||||||||||| Sbjct 494550594 GCGTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 494550653 Query 165766 GAGCCCCACGATGGGC 165781 |||||||||| ||||| Sbjct 494550654 GAGCCCCACGTTGGGC 494550669 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 || |||||| ||||||||||||||||||| ||||| ||||||| |||||||||||| Sbjct 494591896 GCGTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 494591837 Query 165766 GAGCCCCACGATGGGC 165781 |||||||||| ||||| Sbjct 494591836 GAGCCCCACGTTGGGC 494591821 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 || |||||| ||||||||||||||||||| ||||| ||||||| |||||||||||| Sbjct 494593271 GCGTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 494593330 Query 165766 GAGCCCCACGATGGGC 165781 |||||||||| ||||| Sbjct 494593331 GAGCCCCACGTTGGGC 494593346 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 258001447 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 258001388 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 258001387 CCCCACGTTGGGC 258001375 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 257985931 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 257985990 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 257985991 CCCACGTTGGGC 257986002 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 494550408 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 494550467 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 494550468 CCCACGTTGGGC 494550479 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 494592085 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 494592026 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 494592025 CCCACGTTGGGC 494592014 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 494630646 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 494630705 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 494630706 CCCACGTTGGGC 494630717 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 494677095 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 494677036 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 494677035 CCCACGTTGGGC 494677024 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 494549630 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 494549571 Query 165770 CCCACGATGGG 165780 |||||| |||| Sbjct 494549570 CCCACGTTGGG 494549560 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||| ||| |||||||||||||||| Sbjct 494593082 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAGTCTCAGGGTCGTGGGTTCGAGC 494593141 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 494593142 CCCACGTTGGGC 494593153 >seq9 Length=79335909 Score = 84.2 bits (92), Expect = 5e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 165713 CGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 || ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| Sbjct 22384251 CGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCC 22384192 Query 165773 ACGATGGGC 165781 ||| ||||| Sbjct 22384191 ACGTTGGGC 22384183 >seq1 Length=748055161 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||| ||||||||||||||||||| |||| |||||| |||||||||||||| Sbjct 259220116 TTGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGA 259220057 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 259220056 GCCCCACGTTGGGC 259220043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057756016296080