Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2 275 6e-69 seq6 273 2e-68 seq1 93.3 4e-14 >seq2 Length=541556283 Score = 275 bits (304), Expect = 6e-69 Identities = 597/883 (68%), Gaps = 14/883 (2%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || |||||||| || || || | || | || ||||| ||||||||||| || || | | Sbjct 435771112 ACTCCCATTCTCTGATATTCTCCTACTCTGTTCTCGAAGAAGTTAGTTTTCCCTTCCAAA 435771053 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGT 16783 || ||||||||||| |||||||| ||||| ||| ||| || || | || ||| Sbjct 435771052 GAGATATTCTCCATAAAATCAAATGGATTTTCTGCTCTAAAAATCTTGCTAAAACCTAGT 435770993 Query 16784 TCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATT 16843 || || | ||| || ||||||||||| || ||||| |||||| ||| |||||| Sbjct 435770992 TCCAACATAAGTCTGTCTGCTACAAATTCAATGTATTGCTTCATTAAAGTGCAATTCATT 435770933 Query 16844 CCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCC 16903 || || | || | | || ||| ||||| || || ||||| ||| || | Sbjct 435770932 CCAATCAATTTTATATGCAAAGGTTCAGTCAAGAACTCCTGTTCTATTCTAACAGCA--C 435770875 Query 16904 TTA--ATAATA-CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATC 16960 | | ||||| || || || |||||| || || | || || ||||| ||||| Sbjct 435770874 TGACGATAATTTCTTTCA-CTTTTTCCTCTGAAGGCTTGTGAACCAGGTGTTTGAACATT 435770816 Query 16961 AGACATGCGAAA-TCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019 | || || ||| || |||||||| |||| |||||||| |||||||| || ||||| || Sbjct 435770815 AAGCAGGCAAAAATCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATTTGAAAAAGT 435770756 Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAA 17079 || || ||||| ||||||||||| | ||| ||||| | || || || |||||||| Sbjct 435770755 TAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAA 435770696 Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTT 17139 ||| || || || || | |||||| || | | |||| | || || || ||||||| Sbjct 435770695 GAAGATTCCTTCAACTGCTGCAAAAGCTACAACATGTTCACCATATGTTGCTTCTTTGTC 435770636 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 | ||||||| |||| || ||||| | || | ||| | ||||| ||||| Sbjct 435770635 CCCAATCCATCATAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGC 435770576 Query 17200 CTT--AAATAATTTCTCTTTTTCCTGTA-GGTCGATTATATACGTATCGATGAGTAGGCT 17256 || | | || ||| |||| || || |||| | ||||| || || || || || | Sbjct 435770575 ATTGAAGAGAAATTCCCTTT---CTTTAGGGTCCTTAATATAAGTGTCAATAAGAAGATT 435770519 Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATC-GGGCTT 17315 |||||||| || |||||| ||||||| | || || || || || ||||| | |||||| Sbjct 435770518 ATACATTTCAGAATGTATGCTCTCCATTCCAATTTGGAAGCCATAGAAGCAGCGGGGCTT 435770459 Query 17316 CCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375 | | || | ||||| | || || ||| | | |||||| || | ||||| || | Sbjct 435770458 CTGTTACCTATACTTCTTGGCTAAACCGCTCCACCAAATTTTCATTTATTATGCCATCAC 435770399 Query 17376 TCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGC 17435 | || || || || || || | ||| ||||| || || || || | | | | | Sbjct 435770398 TTGCTGCAAAGAAAGCTAACACATGAGATATGAAGTACTTCTCCTCAGACTTCAAAGCTT 435770339 Query 17436 GCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTG 17495 ||||| || | ||| || || | |||||| || || | ||||| || ||| || Sbjct 435770338 CCCAGTGCTGCATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTATG 435770279 Query 17496 CCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || |||||||| | |||||| |||| ||| | |||||||| Sbjct 435770278 ATTTCTTATACATGTGCCAAATGTCATGGTACTCAATGGGGAA 435770236 >seq6 Length=292091736 Score = 273 bits (302), Expect = 2e-68 Identities = 594/879 (68%), Gaps = 15/879 (2%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || |||||||| || || || | || | || ||||| ||||||||||| || || | | Sbjct 153786750 ACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTCCCTTCCAAA 153786691 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGT 16783 || |||| |||| |||||||| |||| ||| ||| || || | | ||| Sbjct 153786690 GAGATAT---CCATAAAATCAAATAGATTTTCTGCTCTAAAAATCTTGCTAAAAGCTAGT 153786634 Query 16784 TCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATT 16843 || || | ||| || ||||||||||| |||||||| |||||| ||| |||||| Sbjct 153786633 TCCAACATAAGTCTGTCTGCTACAAATTCGATATATTGCTTCATTAAAGTGCAATTCATT 153786574 Query 16844 CCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCC 16903 || || | ||| || | |||||| |||||||| || ||||| ||| || | Sbjct 153786573 CCAATCAACTTTACAGGCAAAGCTTCAGTCAAAAACTCCTGTTCTATTCTAACAGCATTG 153786514 Query 16904 TTAATAATA-CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAG 16962 || || || || || |||||| || || | ||| || ||||| ||||| | Sbjct 153786513 ACGATCATTTCTTTCA-CTTTTTCCTCTGAAGGCTTGTGTACCAGGTGTTTGAACATTAA 153786455 Query 16963 ACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAA 17022 || || ||||| |||||||| ||||| |||||||| |||| ||| || ||||| || || Sbjct 153786454 GCAGGCAAAATCACAATGTAAACCCTCATCTCTGCTAATAAATTCATTTGAAAAAGTTAA 153786395 Query 17023 CCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAA 17082 || ||||| ||||||||||| ||| ||||| | || || || ||||||||||| Sbjct 153786394 TCCAGGCATTAAACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACCAGAAAAGAA 153786335 Query 17083 TATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACG 17142 || || || || | |||||| || | ||||| | || || || ||||||| | Sbjct 153786334 GATTCCTTCAACTGCTGCAAAAGCTGCAACACGTTCACCATATGTTGCTTCTTTGTCCCC 153786275 Query 17143 AATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT 17202 |||||| || |||| || ||||| | || | ||| | ||||| ||||| || Sbjct 153786274 AATCCA--TCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCATT 153786217 Query 17203 --AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTAC 17260 | | || ||| |||| || |||| ||| ||| || || || || || || ||| Sbjct 153786216 GAAGAGAAATTCCCTTT---CTTTAGGGTCCTTA-ATATGTGTCAATAAGAAGACTATAC 153786161 Query 17261 ATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCT 17320 ||||| || ||| | || |||| || || || || || || ||||| |||||||| | | Sbjct 153786160 ATTTCAGAATGTCTATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCTTCTGTT 153786101 Query 17321 ATTTGAACTTCCACGTAGAATCG-TTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379 | || ||||| | || || ||| | | |||||| || || ||||| || || || Sbjct 153786100 ACCTGTACTTCTTGGCTAAACCGCTTCAACCA-ATTTTCATTTACTATGCCATCACTTGC 153786042 Query 17380 GGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCA 17439 || || ||| | || | || ||||| || || ||||| | | | | ||| Sbjct 153786041 TGCAAAGAACCCTAACACGTGAGATATGAAGTACTTCTCGTCAGACTTCAAAGTTTCCCA 153785982 Query 17440 GTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTT 17499 || || | ||| || || | |||||| || || | ||||| || ||| |||| || Sbjct 153785981 GTGCTGAATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCTTT 153785922 Query 17500 TTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 |||||||| | ||||| |||| ||| | |||||||| Sbjct 153785921 CTTATACATGTGTCAAATGTCATGGTACTCAATGGGGAA 153785883 >seq1 Length=748055161 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| || ||||| || || || ||||| |||||||||| Sbjct 529237633 CCTCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 529237692 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||||||||| || || || || | |||||| | Sbjct 529237693 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAG 529237752 Query 17106 C 17106 | Sbjct 529237753 C 529237753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517513149890880