Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq6 338 6e-88 seq2 320 2e-82 seq1 116 4e-21 seq3 82.4 8e-11 >seq6 Length=292091736 Score = 338 bits (374), Expect = 6e-88 Identities = 614/886 (69%), Gaps = 17/886 (2%) Strand=Plus/Minus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || |||||||| || || || | || | || ||||||||||||||||| || || ||| Sbjct 153786750 ACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTCCCTTCCAAA 153786691 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGT 16021 || |||| ||||||||||||| |||| ||| ||| ||||| | | ||| Sbjct 153786690 GAGATAT---CCATAAAATCAAATAGATTTTCTGCTCTAAAAATCTTGCTAAAAGCTAGT 153786634 Query 16022 TCCGTAAC-TAA-TCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAA 16079 ||| ||| ||| ||| |||||||||||||| |||||||| |||||| |||||| | Sbjct 153786633 TCC--AACATAAGTCTGTCTGCTACAAATTCGATATATTGCTTCATTAAAGTGCAATTCA 153786576 Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139 |||| || | ||| || | ||||| || ||||| | |||||||| ||| || | Sbjct 153786575 TTCCAATCAACTTTACAGGCAAAGCTTCAGTCAAAAACTCCTGTTCTATTCTAACAGCAT 153786516 Query 16140 CTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTA 16199 || || || | || | || || || | || |||||||| ||||||| Sbjct 153786515 TGACGATCATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGTACCAGGTGTTTGAACATTA 153786456 Query 16200 GACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTA 16259 || || || || ||||||| || || |||||||| |||| ||| || |||||||||| Sbjct 153786455 AGCAGGCAAAATCACAATGTAAACCCTCATCTCTGCTAATAAATTCATTTGAAAAAGTTA 153786396 Query 16260 ACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGA 16319 | || |||||| ||||||||||| ||||||||| | ||||| || || ||||||| Sbjct 153786395 ATCCAGGCATTAAACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACCAGAAAAGA 153786336 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 | || || ||||| | ||||||||| | ||||| | || || || ||||| | | Sbjct 153786335 AGATTCCTTCAACTGCTGCAAAAGCTGCAACACGTTCACCATATGTTGCTTCTTTGTCCC 153786276 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 |||||| || |||| || ||||| | ||| | |||| | ||||| ||||| | Sbjct 153786275 CAATCCA--TCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCAT 153786218 Query 16440 T--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497 | | | || ||| | |||| | | || ||| ||| || ||||| || | ||| || Sbjct 153786217 TGAAGAGAAATTCCC--TTTCTTTAGGGTC-CTTA-ATATGTGTCAATAAGAAGACTATA 153786162 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557 |||||| || ||| | || | || || || || || ||||||||||| || || || | Sbjct 153786161 CATTTCAGAATGTCTATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCTTCTGT 153786102 Query 16558 TATTTGTACTTCCACGTAAAATCG-TTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 || |||||||| | ||| || ||| ||| || ||||| || || || ||||||| Sbjct 153786101 TACCTGTACTTCTTGGCTAAACCGCTTCAACCA-ATTTTCATTTACTATGCCATCACTTG 153786043 Query 16617 CAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCC 16676 | ||||| ||| | || | ||| ||||| || || |||||||| | | | | | || Sbjct 153786042 CTGCAAAGAACCCTAACACGTGAGATATGAAGTACTTCTCGTCAGACTTCAAAGTTTCCC 153785983 Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 | | | | ||| || || | |||||| || || | ||||| ||| ||| |||| | Sbjct 153785982 AGTGCTGAATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCTT 153785923 Query 16737 TTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 | |||||||| | ||||| |||| ||| | ||||| || | ||| Sbjct 153785922 TCTTATACATGTGTCAAATGTCATGGTACTCAATGGGGAAGATGAC 153785877 >seq2 Length=541556283 Score = 320 bits (354), Expect = 2e-82 Identities = 608/887 (69%), Gaps = 10/887 (1%) Strand=Plus/Minus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || |||||||| || || || | || | || ||||||||||||||||| || || ||| Sbjct 435771112 ACTCCCATTCTCTGATATTCTCCTACTCTGTTCTCGAAGAAGTTAGTTTTCCCTTCCAAA 435771053 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGT 16021 || ||||| |||||||||||||| ||||| ||| ||| ||||| | || ||| Sbjct 435771052 GAGATATTCTCCATAAAATCAAATGGATTTTCTGCTCTAAAAATCTTGCTAAAACCTAGT 435770993 Query 16022 TCCGTAAC-TAA-TCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAA 16079 ||| ||| ||| ||| |||||||||||||| || ||||| |||||| |||||| | Sbjct 435770992 TCC--AACATAAGTCTGTCTGCTACAAATTCAATGTATTGCTTCATTAAAGTGCAATTCA 435770935 Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139 |||| || | | || | | || || || || || | |||||||| ||| || Sbjct 435770934 TTCCAATCAATTTTATATGCAAAGGTTCAGTCAAGAACTCCTGTTCTATTCTAACAGCAC 435770875 Query 16140 CTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTA 16199 || || || | || | || || || | || |||||||| ||||||| Sbjct 435770874 TGACGATAATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGAACCAGGTGTTTGAACATTA 435770815 Query 16200 GACACGCGAAG-TCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || || ||||||| | || |||||||| |||||||| || ||||||||| Sbjct 435770814 AGCAGGCAAAAATCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATTTGAAAAAGTT 435770755 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 || || |||||| ||||||||||| | ||||||||| | ||||| || || |||||| Sbjct 435770754 AATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAG 435770695 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || || || ||||| | ||||||||| | | |||| | || || || ||||| | Sbjct 435770694 AAGATTCCTTCAACTGCTGCAAAAGCTACAACATGTTCACCATATGTTGCTTCTTTGTCC 435770635 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 | ||||||| |||| || ||||| | ||| | |||| | ||||| ||||| Sbjct 435770634 CCAATCCATCATAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCA 435770575 Query 16439 TT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 || | | || ||| | |||| | | || | ||||| || ||||| || | | | | Sbjct 435770574 TTGAAGAGAAATTCCC--TTTCTTTAGGGTCCTTAATATAAGTGTCAATAAGAAGATTAT 435770517 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATC-GAGCCTCC 16555 ||||||| || |||||| |||| || | || || || ||||||||||| | | || || Sbjct 435770516 ACATTTCAGAATGTATGCTCTCCATTCCAATTTGGAAGCCATAGAAGCAGCGGGGCTTCT 435770457 Query 16556 GCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615 | || | |||||| | ||| || ||| ||| || ||||| | || || |||||| Sbjct 435770456 GTTACCTATACTTCTTGGCTAAACCGCTCCACCAAATTTTCATTTATTATGCCATCACTT 435770397 Query 16616 GCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGC 16675 || ||||| || || || | || ||||| || || || ||||| | | | | | Sbjct 435770396 GCTGCAAAGAAAGCTAACACATGAGATATGAAGTACTTCTCCTCAGACTTCAAAGCTTCC 435770337 Query 16676 CAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCC 16735 || | | | ||| || || | |||||| || || | ||||| ||| ||| || Sbjct 435770336 CAGTGCTGCATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTATGAT 435770277 Query 16736 TTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 || |||||||| | |||||| |||| ||| | ||||| || | ||| Sbjct 435770276 TTCTTATACATGTGCCAAATGTCATGGTACTCAATGGGGAAGATGAC 435770230 >seq1 Length=748055161 Score = 116 bits (128), Expect = 4e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| || ||||||||||| || |||||| ||||||||||| Sbjct 529237635 TCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 529237694 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||| | ||||| || || |||||||| || || ||||| | ||||||||| Sbjct 529237695 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAGC 529237753 Score = 89.7 bits (98), Expect = 5e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || |||||||| || || || | || | || |||||||||||||||||||| || ||| Sbjct 529233562 ACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTTCCTTCCAAA 529233621 Query 15962 GATATATTTTCCATAAAATCAAAGGGATT 15990 || ||||| |||||||||||||| ||||| Sbjct 529233622 GAGATATTCTCCATAAAATCAAATGGATT 529233650 >seq3 Length=527952102 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| || || || || ||||||||||| ||||| || |||||||| ||| |||||| Sbjct 368174864 ATATAGGTGTCTATTAGCAAACTGTACATCTCTGAATGAATGTTCTCAATGAGAATCTGA 368174923 Query 16532 AATCCATAGAAGCATCGAGCCTCCG 16556 || |||||||| || || ||||||| Sbjct 368174924 AAGCCATAGAAACAGCGTGCCTCCG 368174948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511382334317120