Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq5 214 1e-50 seq3 167 2e-36 >seq5 Length=304825324 Score = 214 bits (236), Expect = 1e-50 Identities = 458/681 (67%), Gaps = 4/681 (1%) Strand=Plus/Minus Query 18555 ACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTCGATACAATTTGCGAAATGAA 18614 || || | ||| || | ||| | || || |||||| | ||||| ||||| |||| Sbjct 43288836 ACCGGCACCGGCACCCTGTCTGTGTTCGGCATGCAAAACCTCTACAACCTGCGAGGTGAA 43288777 Query 18615 TTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGG 18674 |||||| | | || || |||||||| || ||| || ||| |||| || || | ||| Sbjct 43288776 TTTCCTTTGCTGACAACTAAGCGTGTGTTCTGGTAGGGTGTCCTGGAGGAACTGCTGTGG 43288717 Query 18675 TTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATATGGGAT 18734 ||||| | || | || || || || ||| |||| || | || || |||||| Sbjct 43288716 TTTATTAGGGGTTGCACAAATGGTAAGGAGCTCTCCGCCAAGGGGATGACGATCTGGGAT 43288657 Query 18735 ATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACGGGGGAC 18794 | || || | || || | | | |||||| | | ||| | | || || Sbjct 43288656 GCCAATGGGTCACGTGAACTTTTGGACAATCTGGGCTTCACTCAGAGA-AGAAGGAGGT- 43288599 Query 18795 CTTGGCCCCATT-TACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCA 18853 |||| ||| | | | ||||||||||||||||||||| || ||||| ||||| | Sbjct 43288598 -TTGGGACCAGTGTGTGCCTTCCAGTGGAGACATTTTGGGGCAGAATACAAAGAGATGAA 43288540 Query 18854 ATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAAC 18913 || | |||| ||||||| | | || ||| |||| || || || | ||| ||||| Sbjct 43288539 CACAGATTATTCTGGGCAAGGAGTGGGTCTGCTACAAAAAGTCATCGACAAAATCAAAAC 43288480 Query 18914 AAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAAT 18973 ||||| || | || | || ||||| | |||||| |||||| ||| | || | || Sbjct 43288479 CAACCCTGATGACAGAAGGATCATTATGTGTGCTTGGAGTCCAAAAGATCTTCCTCTCAT 43288420 Query 18974 GGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTG 19033 || | |||| || ||| | | |||||||| ||||| ||||| ||||| || ||||| Sbjct 43288419 GGCCTTGCCTCTGTGCCACGCTCTCTGTCAGTTCTACGTAGCAAATGGTGAGTTTTCCTG 43288360 Query 19034 CCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATA 19093 || |||| ||| |||| || ||||||||||||||||| ||||||| |||||| | || Sbjct 43288359 TCAGCTATAGCAGCGATCCGGAGATATGGGCCTTGGGGTGCCGTTCACCATTGCCAGTTA 43288300 Query 19094 TGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCA 19153 | || || |||||||| | || || | ||||| || || | || ||||| | || Sbjct 43288299 CTCCCTGCTCACCTACATGATTGCTCACATCACAGGCCTGAAGCCAGGTGATTTTGTACA 43288240 Query 19154 TACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCTAGC 19213 | |||| ||||| ||| | || ||||||||| || | ||||| | ||||| Sbjct 43288239 CTCTCTGGGAGATGCTCATGTATATGAGAATCATATTGAGCCACTAAAAATTCAGCTTCA 43288180 Query 19214 TCGATCCCCAAAACCTTTTCC 19234 ||| |||| |||||||| Sbjct 43288179 GCGAGAACCAAGGCCTTTTCC 43288159 >seq3 Length=527952102 Score = 167 bits (184), Expect = 2e-36 Identities = 309/450 (69%), Gaps = 4/450 (1%) Strand=Plus/Minus Query 18807 TACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATTTA 18866 || ||||||||||||||||||||||| || ||||| | ||| | || | |||| Sbjct 37329383 TATGGCTTCCAGTGGAGACATTTTGGGGCAGAATACAGAGAGATGAACACAGATTATTCT 37329324 Query 18867 CAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGC 18926 ||||||| | |||||||| |||| || | || | ||| ||||| ||||| || | Sbjct 37329323 GGGCAAGGAGTGGATCAGCTACAAA--GTCACTGACAAAATCAAAACCAACCCTGATGAC 37329266 Query 18927 CGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCA 18986 || | || ||||| | ||| ||||||||| ||| | || | |||| | |||||| Sbjct 37329265 AGAAGGATCATTATGTGCGCTTAGAATCCAAAAGATCTTCCTCTCATGGCCTTGCCTCCA 37329206 Query 18987 TGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAG 19046 || || | | |||| ||| ||||| | ||||| || | ||||| ||| |||||||| Sbjct 37329205 TGCCA-GCTCTCTGTCCGTTCTACGTAGTGAACGGAGAGCTTTCCTGTCAACTATACCAG 37329147 Query 19047 AGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACC 19106 ||| || ||||||||| | ||||| ||||||| |||||| | || || || ||| Sbjct 37329146 CAATCTGGAGATATGGGCATCGGGGTGCCGTTCAGCATTGCCAGTTACTTCCTGCTCACC 37329087 Query 19107 TACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGAT 19166 ||||| | | || || || || || | || || || | | | | |||| ||| Sbjct 37329086 TACATGATCACTCACACCACGGGCCTGAAGCCAGGTGACTTTGTACCTTCTCTGGGAGAT 37329027 Query 19167 GCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCTAGCTCGATCCCCAAAA 19226 || ||| | || |||||||||| || | ||||| | ||||| | || | || | Sbjct 37329026 GCTCATGTATATGTGAATCATATTGAGTCCCTAAAAATTCAGCTTCCATGAGAGCAAAGA 37328967 Query 19227 CCTTTTCCTTGCCTTAAAATTATTC-GAAA 19255 ||||| || || |||||| ||| |||| Sbjct 37328966 CCTTTCCCCAAGCTCAAAATTCTTCAGAAA 37328937 Score = 113 bits (124), Expect = 4e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 18981 CCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTA 19040 ||||| || ||| | | |||||||| ||||| ||||| ||||| | ||||| || || Sbjct 265126739 CCTCCGTGCCACGCTCTCTGTCAGTTCTACGTAGCAAATGGTGAGCTTTCCTGTCAGCTA 265126798 Query 19041 TACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTT 19100 |||||| |||| || ||||||||||| ||||| |||||||||||||| | || | || Sbjct 265126799 TACCAGCGATCTGGAGATATGGGCCTCGGGGTGCCGTTCAACATTGCCAGTTACTCCCTG 265126858 Query 19101 CTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 || |||||||| | || || | ||||| || || Sbjct 265126859 CTCACCTACATGATTGCTCACATCACAGGCCTGAA 265126893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399479577321720