Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq6 345 3e-90 seq1 206 2e-48 seq2 194 1e-44 seq5 188 5e-43 seq3 147 2e-30 seq4 93.3 3e-14 >seq6 Length=292091736 Score = 345 bits (382), Expect = 3e-90 Identities = 411/556 (74%), Gaps = 5/556 (1%) Strand=Plus/Plus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 ||||| | || || ||||||||||||||||| |||| ||| | ||| |||||||| ||| Sbjct 196518112 TATTAGTCATGTTTTTCATATACTTCAAATTTATACTGAATGCCTTTTTCTTCTTGGACA 196518171 Query 4027 TTAGAAAG--AACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTG 4084 | | | |||| ||| ||||||| | |||| ||||||| |||||||| ||||| Sbjct 196518172 TCAACATACTAACAGTTGAATATTCTTGGA---GTTTATATTTCTTTAGATCAATTTCTG 196518228 Query 4085 GAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGC 4144 | ||||| ||||||| ||||| ||||||| || || | | |||||||| ||| | Sbjct 196518229 GGAAAAATGTGTCACTCTCAAACTCTTGCAAAATTCTTATTATAAACAGTTGCTGATGAC 196518288 Query 4145 ATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTA 4204 || | | |||| |||| ||||| |||| || ||||||| |||| | | |||||| | Sbjct 196518289 CAGGTTTATTCATTACTTCCTTATAAGCAGAGCTGCCTCCAACTATCTAAAGCATGTCCA 196518348 Query 4205 CTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTA 4264 | |||| ||||| |||||| ||||| ||| ||||| |||||||| | ||| | || | Sbjct 196518349 CCTTATCTGCTAGTTCTGGAAGTTCGAGAAGGTTTAATGCATCATCCAGACTGCTGGCCA 196518408 Query 4265 AAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGC 4324 | ||||| ||| ||| ||| | ||||| ||||| |||| ||||| |||||||||||| Sbjct 196518409 GATAATGAACTCCATGAGGAGGTTCCTTCAGTTCTCTGCTAAGAACTACATTAATTCTGT 196518468 Query 4325 CTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTA 4384 ||||||| || | |||||||||||| |||||||| ||||| | ||||| ||||||| Sbjct 196518469 CTTTTAATGGTTGACACTTCTCAGGAATGGAGAACCAGGTCTTCCTTCCCATTATCACTA 196518528 Query 4385 AATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCAT 4444 ||||| |||| | ||| |||| || || || ||| | ||||| | || || || | Sbjct 196518529 GATTCTATTTACATTCTACTGAAGGAGTTGTGGTGATTGTCTGGAAGTACTTGAATTCGT 196518588 Query 4445 TCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAG 4504 || | | | ||||| |||| ||| || | || |||||||||||||| || | |||| Sbjct 196518589 TCCTGAAAATGGGCCAGGGCAGGTTCCCATTCTTCCCAATGCCCATGTTCTGGGACACAG 196518648 Query 4505 CAACAATGCAGTTTAG 4520 | |||||||| || Sbjct 196518649 TGATGATGCAGTTGAG 196518664 >seq1 Length=748055161 Score = 206 bits (228), Expect = 2e-48 Identities = 319/452 (71%), Gaps = 14/452 (3%) Strand=Plus/Plus Query 3990 TTCAAATTTGTACTTAATACTTTTCTCTTC-TTGC-ACATTAGAAAGAACACTTGGATAT 4047 || ||||| || ||||||| | | | || ||| | |||| |||||||| | Sbjct 492291828 TTTAAATTGGTGCTTAATAAATGTTTATTGATTGATAAATTAAAAAGAACA--------T 492291879 Query 4048 TCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAG 4107 ||| | |||||| ||||||| || ||||| ||||| |||||| | ||||| ||||| Sbjct 492291880 TCTGGGAGAAGTTTATATTTCTTTATATCAACTTCTG-AAAAAATGCATCACACTCAAAT 492291938 Query 4108 TCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTA 4167 ||||| || | ||||||||||||| || || | |||| ||| ||| Sbjct 492291939 ATTTGCAAAATTTTTGTCACAAACAGTTGCTGACAATCAGGTTTCTTCATTACTTTGTTA 492291998 Query 4168 TACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGCTGT 4227 || ||||| || ||||||| | ||| |||||| | || |||||||||| |||||| || Sbjct 492291999 TAAACAGAGCTGCCTCCAACTGCCCAAACCATGCCCACCTTATTTGCTAGTTCTGGAAGT 492292058 Query 4228 TCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGC 4287 || ||| ||||| |||||| | | ||| | || || ||||| ||| | ||| | Sbjct 492292059 TCAAGAAGGTTTAATGCATCAGCCAGACTGCTGGCACAATAATGATCTCCACTAGGAGGT 492292118 Query 4288 TCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCA 4347 ||||| ||||| |||||||| | || | ||| |||||||||| | |||||||| Sbjct 492292119 TCCTTCAGTTCTCAACTGAGAACTA---TAGTCCTGTCTTTTAAAGGTTGACTCTTCTCA 492292175 Query 4348 GGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTGGTACAGAA 4407 ||||| |||||||| ||||| || |||| | || | |||||||||| || ||| ||| Sbjct 492292176 GGAATGGAGAACCAGGTCTTCTTCTCCATTACCATCAGATTCTGTTTACCTTCTACTGAA 492292235 Query 4408 GATGTAGTAGTCATTCTTTGGAAATGTTTAAA 4439 | || |||| |||| | ||||| || || || Sbjct 492292236 GGAGTTGTAGACATTTTCTGGAAGTGCTTGAA 492292267 >seq2 Length=541556283 Score = 194 bits (214), Expect = 1e-44 Identities = 374/543 (69%), Gaps = 24/543 (4%) Strand=Plus/Minus Query 3979 TTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACA 4038 || ||||||||||||| || |||| ||| | ||| |||| || |||| | ||||||| Sbjct 161492233 TTTTCATATACTTCAATCTTATACTGAATGCCTTTTACTTCCTGGACATCAATAAGAACA 161492174 Query 4039 CTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCA 4098 |||||| ||||| | |||||| ||||||| ||| |||| ||||| ||| ||||| Sbjct 161492173 CTTGGACATTCTCAGAGAAGTTTATATTTCTTTAGGTCAACTTCTGAGGAAAGTGTGTCC 161492114 Query 4099 CATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTC-AT 4157 |||||||| ||||| | || || | ||||| | | |||| || | || || Sbjct 161492113 CATTCAAATTCTTGTAAAATTCTTGCTGCAAAC---TGATGATC---AGGTTTCTTCAAT 161492060 Query 4158 AGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGT-CTACTTTATTTGCTA 4216 ||||||||| ||||| || ||| || || ||| | ||||| | | ||| |||||| Sbjct 161492059 TACTTCTTTATGAACAGAGCTGCCTAAAACTACCCAAATCATGTCCCATCTTACTTGCTA 161492000 Query 4217 ATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTC 4276 |||||| || | ||| |||| |||| || | | || | | || ||||| Sbjct 161491999 GTTCTGGAAATT-GAAAAGGTTTACTGCATTGTCCGTGATGCTGGCAAGATAAAAAGCTC 161491941 Query 4277 TATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCC 4336 ||| ||||| ||||||||||| | || ||||| ||||| |||||| ||| Sbjct 161491940 CATGAGGAAGTTCCTTTAGTTCTCTACTAAGAAC--------TTCTGTCTTTTAGAGGTT 161491889 Query 4337 GGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTAT 4396 | |||||||||||||| |||||| | |||| | ||||| ||||| | ||| ||||| | Sbjct 161491888 GATTCTTCTCAGGAATGGAGAACTAGTTCTTCT--CCCAT-ATCACCAGATTTTGTTTTT 161491832 Query 4397 CTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCATAAGTCTTG 4456 || ||| | | || | ||||||| | | ||| || || |||||| | || | Sbjct 161491831 CTTCTACTCAGGGAGTTGGAGTCATTTTCTCCTAATACTTGAATTCATTCCTGAG--CAG 161491774 Query 4457 GC--CAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAACAATGCA 4514 || || ||||| | || | ||| | ||||||||||| || | ||| ||||| || Sbjct 161491773 GCAGCAGGGCAAATCTCCATCTTTCCTGATGCCCATGTTCTGGGACCCAGTGACAATACA 161491714 Query 4515 GTT 4517 ||| Sbjct 161491713 GTT 161491711 >seq5 Length=304825324 Score = 188 bits (208), Expect = 5e-43 Identities = 419/625 (67%), Gaps = 4/625 (1%) Strand=Plus/Plus Query 101645 GGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAG 101704 ||||| || || || |||| | ||| ||||| || | ||||| |||| |||| Sbjct 43288159 GGAAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTTAGTGGCTCAATATGATTCTCATAT 43288218 Query 101705 ATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCA 101764 | ||||||||||| | || || | ||| || || ||| || |||| |||||| Sbjct 43288219 ACATGAGCATCTCCCAGAGAGTGTACAAAATCACCTGGCTTCAGGCCTGTGATGTGAGCA 43288278 Query 101765 ATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCA 101824 |||||| | || | || || || || |||||| | || ||||| || | |||||||| Sbjct 43288279 ATCATGTAGGTGAGCAGGGAGTAACTGGCAATGGTGAACGGCACCCCAAGGCCCATATCT 43288338 Query 101825 GCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAAT 101884 | |||| || || || |||||||||| || |||| || || || |||| | Sbjct 43288339 CCGGATCGCTGCTATAGCTGACAGGAAAACTCACCATTTGCTACGTAGAACTGACAGAGA 43288398 Query 101885 ACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAAC 101944 | || || | ||||| |||| ||||| ||| | ||||||||||||| | Sbjct 43288399 GCGTGGCACAGAGGCAAGGCCATGAGAGGAAGATCTTTTGGACTCCAAGCACACATAATG 43288458 Query 101945 ATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACT 102004 |||||||| || |||||| ||||| || | || || | | || || | | ||| Sbjct 43288459 ATCCTTCTGTCATCAGGGTTGGTTTTGATTTTGTCGATGACTTTTTGTAGCAGACCCACT 43288518 Query 102005 CCTTCTCCTTTATAATC-GCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTG 102063 |||| || |||||| | | || | |||| |||||||| || ||||| |||||||| Sbjct 43288519 CCTTGCCCAGAATAATCTGTGTTCATC-TCTTTGTATTCTGCCCCAAAATGTCTCCACTG 43288577 Query 102064 AAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAA 102123 || || |||| ||||| | | ||||||| |||||| | || || || || || || Sbjct 43288578 GAAGGCACACACTGGTCCCAAACCTCCTTCTTCTCTG--AGTGAAGCCCAGATTGTCCAA 43288635 Query 102124 AAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCT 102183 || | | || ||||| |||||||| || || || || || ||||| || | Sbjct 43288636 AAGTTCACGTGACCCATTGGCATCCCAGATCGTCATCCCCTTGGCGGAGAGCTCCTTACC 43288695 Query 102184 GTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCT 102243 | || | || || |||||||||| |||||| || | ||||| ||| || || | Sbjct 43288696 ATTTGTGCAACCCCTAATAAACCACAGCAGTTCCTCCAGGACACCCTACCAGAACACACG 43288755 Query 102244 CTTAGTAGTTAAAAGTGGAAATTCA 102268 |||||| || | | ||||||||| Sbjct 43288756 CTTAGTTGTCAGCAAAGGAAATTCA 43288780 >seq3 Length=527952102 Score = 147 bits (162), Expect = 2e-30 Identities = 316/459 (69%), Gaps = 10/459 (2%) Strand=Plus/Plus Query 101671 CTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGAT 101730 ||| ||||| || | ||||| |||| ||||| | ||||||||||| | || | | | Sbjct 37328985 CTGAATTTTTAGGGACTCAATATGATTCACATATACATGAGCATCTCCCAGAGAAGGTAC 37329044 Query 101731 AAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCT 101790 ||| || || ||| || ||| |||| |||||| | || | || | || || Sbjct 37329045 AAAGTCACCTGGCTTCAGGCCCGTGGTGTGAGTGATCATGTAGGTGAGCAGGAAGTAACT 37329104 Query 101791 AGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGA 101850 |||||| | || ||||| || | |||||||| | ||| || || ||||||||||| Sbjct 37329105 GGCAATGCTGAACGGCACCCCGATGCCCATATCTCCAGATTGCTGGTATAGTTGACAGGA 37329164 Query 101851 AAGCTTTCC-ATCACAGACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTT 101909 ||||| ||| |||| || || || ||| | | || || || ||||| |||| Sbjct 37329165 AAGCTCTCCGTTCAC-TACGTAGAACGGAC-AGAGAGCTGGCATGGAGGCAAGGCCATGA 37329222 Query 101910 TAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTT 101969 ||||| ||| |||| |||| ||||| | |||||||| || |||||| |||| Sbjct 37329223 GAGGAAGATCTTTTGGATTCTAAGCGCACATAATGATCCTTCTGTCATCAGGGTTGGTTT 37329282 Query 101970 TTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATC-GCGCCCA 102028 | || | ||| | ||| || || || || ||||||| || |||||| | | || Sbjct 37329283 TGATTTTGTCAGT-GACT-TTGTAGCTGATCCACTCCTTGCCCAGAATAATCTGTGTTCA 37329340 Query 102029 ACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCT 102088 | || | |||||||| || ||||| |||||||| || |||||| | |||| | |||| Sbjct 37329341 TC-TCTCTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAC-CCTGTCCCAAATCT 37329398 Query 102089 CCTTCATCTCTGTCA-TAAAAACCAAGTTTATCTAAAAA 102126 ||||| ||||||| | | || ||||| || || ||||| Sbjct 37329399 CCTTCTTCTCTGTGAGTGAAGCCCAAG-TTGTCCAAAAA 37329436 Score = 113 bits (124), Expect = 3e-20 Identities = 88/105 (84%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| |||| ||||| |||||||||||| ||||||| || || ||||||||| Sbjct 227415516 CTTCAGTTCTCTGCTAAGAACTACATTAATTCTGTCTTTTAATGGTCGACACTTCTCAGG 227415457 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTT 4394 ||| |||||||| |||||||| ||||| ||||| | ||||||||| Sbjct 227415456 AATGGAGAACCAGGTCTTTTTCCCCATTATCACCAGATTCTGTTT 227415412 >seq4 Length=435153693 Score = 93.3 bits (102), Expect = 3e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 ||||||| || || || |||||||||||||| |||| ||| | || | || ||| ||| Sbjct 137243843 TATTAATCATGTTTTTCTTATACTTCAAATTTATACTGAATGCCTTCTTATTTTTGGACA 137243902 Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCA 4077 | || ||||| || ||||||| || |||||||| ||||||| ||||||| Sbjct 137243903 TCAGTAAGAATACCTGGATATCCTTGGAAAAGTTTATATTTCTTTAGATCA 137243953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361229115811016