Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq2 269 3e-67 seq6 187 3e-42 >seq2 Length=541556283 Score = 269 bits (298), Expect = 3e-67 Identities = 321/434 (74%), Gaps = 1/434 (0%) Strand=Plus/Minus Query 83104 GCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGC 83163 ||||||||| ||| ||| ||| |||| |||||| | ||||||||| || ||||| | Sbjct 146227799 GCTGTACCTCTTCACTGGCACGCCATCAGGACCCACAAGGAACTTCTCAAAATTCCAAGA 146227740 Query 83164 CACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCT 83223 | ||| || | |||||||||||||||| ||||||| |||||| ||| || | | Sbjct 146227739 GATGTCATTCCTGCACACTGGAGACCAGATCATGAGCTTTGGGTCGGTCATTAGGGAATT 146227680 Query 83224 CATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT 83283 || || || || || | ||||| ||||| |||||||||| |||||| || | ||||| Sbjct 146227679 GATATCATCACTTGGGGTTGGCAGTGCCTCCCGTAGGAAGGTGAAGAGAGGGCGAGCCCT 146227620 Query 83284 TGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGG 83343 | | || || ||||| |||||||| |||||||| ||||| |||| || || | ||| Sbjct 146227619 TTCTCCATTCACCTCACACTTCTCAAAGAGCATGAAGTTGGGCTGAAACCCAGAGCTAGG 146227560 Query 83344 ACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAA 83403 | |||| |||| ||| || |||||| |||||| ||| || |||||||| |||| Sbjct 146227559 TCAGACGAATTTCAAAGAATTCAGGATCTCCTCATTCTTGGCATTCTCCTGGTGGCCGAT 146227500 Query 83404 CTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTC 83463 ||||| || || || || ||||| | | || ||| | || || || ||||||||| Sbjct 146227499 TTGGTTGCAGGGAAAGCCGAGCACCATGAAGCCGCGA-CCCCGTGGTGCTTCTGCAGCTC 146227441 Query 83464 GTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAG 83523 |||||||| ||||| || ||||| ||| | |||||||| ||| | || ||||||| ||| Sbjct 146227440 CTTCATCTGCGTGTAGTCGCGGACGGTGGTGCCTCAGAGAGACACCACATTCTCGAAGAG 146227381 Query 83524 CAAGACCCGGCCCC 83537 || |||| ||||| Sbjct 146227380 CAGGACCTTGCCCC 146227367 >seq6 Length=292091736 Score = 187 bits (206), Expect = 3e-42 Identities = 217/293 (74%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 83104 GCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGC 83163 ||||||||| ||| ||| ||| || | |||||| | ||||||||| || ||||| | Sbjct 202503266 GCTGTACCTCTTCACTGGCACGCCATCGGGACCCACAAGGAACTTCTCAAAATTCCAAGA 202503325 Query 83164 CACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCT 83223 | ||| || | |||||||||||||||| ||||||| ||||||| ||| || | | Sbjct 202503326 GATGTCATTCCTGCACACTGGAGACCAGATGATGAGCTTGGGGTCGGTCATCAGGGAATT 202503385 Query 83224 CATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT 83283 | || ||||| || || ||||| ||||| || ||||||| |||||| || || ||| | Sbjct 202503386 GGTATCATCGCTTGGGGCTGGCAGTGCCTCCCGGAGGAAGGTGAAGAGAGGGTGAGCCTT 202503445 Query 83284 TGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGG 83343 | || || ||||| |||||||| |||||||| ||||| ||||| || || ||||| Sbjct 202503446 CTCTCCATTCACCTCACACTTCTCAAAGAGCATGAAGTTGGGCTCAAACCCAGAGCCAGG 202503505 Query 83344 ACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGT 83396 |||||| |||| ||| || |||||| |||||| || || ||||||| Sbjct 202503506 TCGGACGAATTTCAAAGAATTCAGGATCTCCTCATTCTTAGCATTCTCCTGGT 202503558 Score = 138 bits (152), Expect = 1e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| ||||||||||| || || || || ||||| | | || ||| | || ||| Sbjct 202505389 CCTGGTGGCCGAACTGGTTGCAGGGAAAGCCGAGCACCATGAAGCCGCGACCCCCGTGGC 202505448 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 || |||||||||||||||||| ||||| || |||| ||| | |||||||| ||||| | Sbjct 202505449 GCTTCTGCAGCTCGTTCATCTGCGTGTAGTCGCGGATGGTGGTGCCTCAGAGAGACGCCA 202505508 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||||||||||| |||| |||||| | || | | ||||| | ||||| | | Sbjct 202505509 CATTCTCGATGAGCAGGACCTTGCCCCGCAGCGAGGCCAGGCTCAGCAGCTCTCCGCTGC 202505568 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | |||| || |||||||||| ||| || Sbjct 202505569 CCAGTAGGCGAGCCGAGAAGGCGTGCACGGA 202505599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608758628440640