Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq5 185 6e-42 seq3 116 3e-21 >seq5 Length=304825324 Score = 185 bits (204), Expect = 6e-42 Identities = 436/651 (67%), Gaps = 7/651 (1%) Strand=Plus/Plus Query 96984 AATCTTTCTGGCAAA-CTTTAGTGTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTG 97042 |||||||||| || ||| || | || |||||||| || |||| |||||| | Sbjct 43288133 AATCTTTCTGAAGAATCTTGAGCTTGGGAAAAGGCCTTGGTTCTCGCTGAAGCTGAATTT 43288192 Query 97043 TGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTC 97102 | || | ||||| |||||| |||| | ||||||||||| | || ||| | ||| || | Sbjct 43288193 TTAGTGGCTCAATATGATTCTCATATACATGAGCATCTCCCAGAGAGTGTACAAAATCAC 43288252 Query 97103 CAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGT 97162 | || | | |||| || || ||||| | || | || || || || |||||| Sbjct 43288253 CTGGCTTCAGGCCTGTGATGTGAGCAATCATGTAGGTGAGCAGGGAGTAACTGGCAATGG 43288312 Query 97163 TAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTC 97222 | || |||||||| || |||||||| | |||| || |||| ||||||||||| || | Sbjct 43288313 TGAACGGCACCCCAAGGCCCATATCTCCGGATCGCTGCTATAGCTGACAGGAAAACTCAC 43288372 Query 97223 CATCACACACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACAT 97282 ||| || || ||||||| | | || || | ||||| ||||| |||| || Sbjct 43288373 CATTTGCTACGTAGAACTGACAGAGAGCGTGGCACAGAGGCAAGGCCATGAGAGGAAGAT 43288432 Query 97283 CTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTAT 97342 || | ||||||||||||| | || ||||| || ||||| || | || | | Sbjct 43288433 CTTTTGGACTCCAAGCACACATAATGATCCTTCTGTCATCAGGGTTGGTTTTGATTTTGT 43288492 Query 97343 TAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATAAT-TGTGCTTAAGACCTTGA 97401 || | | | || || | || |||| ||| ||||| |||| || | ||| Sbjct 43288493 CGATGACTTTTTGTAGCAGACCCACTCCTTGCCCAGAATAATCTGTG-TTCATCTCTTTG 43288551 Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 |||||||| |||||||| ||||| ||||| || | || ||||| | ||||||||||| Sbjct 43288552 TATTCTGCCCCAAAATGTCTCCACTGGAAGGCACACACTGGTCCCAAACCTCCTTCTTCT 43288611 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGAC-CTAGATCCATTTGCATCCCAAATGTG 97520 | | | ||| || || || || ||| || | | || ||||| |||||||| || Sbjct 43288612 C--TGAGTGAAGCCCAGATTGTCCAAA-AGTTCACGTGACCCATTGGCATCCCAGATCGT 43288668 Query 97521 CACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTC 97580 || || || | ||||| || | | || | || || |||||||||| || ||| Sbjct 43288669 CATCCCCTTGGCGGAGAGCTCCTTACCATTTGTGCAACCCCTAATAAACCACAGCAGTTC 43288728 Query 97581 TTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAATC 97631 |||| ||||| ||| || || | ||||||||| | | |||||| || Sbjct 43288729 CTCCAGGACACCCTACCAGAACACACGCTTAGTTGTCAGCAAAGGAAATTC 43288779 >seq3 Length=527952102 Score = 116 bits (128), Expect = 3e-21 Identities = 321/480 (67%), Gaps = 9/480 (2%) Strand=Plus/Plus Query 96987 CTTTCTGGCAAACTTT-AGTGTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGA 97045 ||||||| || ||| || | |||||||| || | || | |||||| | | | Sbjct 37328936 CTTTCTGAAGAATTTTGAGCTTGGGGAAAGGTCTTTGCTCTCATGGAAGCTGAATTTTTA 37328995 Query 97046 GAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAG 97105 | | ||||| ||||||||||| | ||||||||||| | || | | ||| || || | Sbjct 37328996 GGGACTCAATATGATTCACATATACATGAGCATCTCCCAGAGAAGGTACAAAGTCACCTG 37329055 Query 97106 GAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAA 97165 | | | ||| || | |||||| | || | || | || || |||||| | | Sbjct 37329056 GCTTCAGGCCCGTGGTGTGAGTGATCATGTAGGTGAGCAGGAAGTAACTGGCAATGCTGA 37329115 Query 97166 AAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCC-A 97224 | |||||||| | |||||||| | ||| || |||| ||||||||||||| ||| Sbjct 37329116 ACGGCACCCCGATGCCCATATCTCCAGATTGCTGGTATAGTTGACAGGAAAGCTCTCCGT 37329175 Query 97225 TCACACACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCT 97284 |||| || || ||| ||| | | || || || ||||| ||||| |||| |||| Sbjct 37329176 TCAC-TACGTAGAACGGAC-AGAGAGCTGGCATGGAGGCAAGGCCATGAGAGGAAGATCT 37329233 Query 97285 AAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTA 97344 |||| |||| ||||| | || ||||| || ||||| || | || | | | Sbjct 37329234 TTTGGATTCTAAGCGCACATAATGATCCTTCTGTCATCAGGGTTGGTTTTGATTTTGTCA 37329293 Query 97345 ATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATAAT-TGTGCTTAAGACCTTGATA 97403 | | || | || ||||| || |||| ||| ||||| |||| || | || || Sbjct 37329294 GTGA-CT-TTGTAGCTGATCCACTCCTTGCCCAGAATAATCTGTG-TTCATCTCTCTGTA 37329350 Query 97404 TTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCT 97463 |||||| |||||||| ||||| ||||| |||| | | |||| | |||||||||||||| Sbjct 37329351 TTCTGCCCCAAAATGTCTCCACTGGAAGCCAT-ACCCTGTCCCAAATCTCCTTCTTCTCT 37329409 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 |||| || || ||||| | || | || || || || |||||||| || |||||||| Sbjct 265126884 GTGATGTGAGCAATCATGTAGGTGAGCAGGGAGTAACTGGCAATGTTGAACGGCACCCCG 265126825 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 || |||||||| | |||| || |||| |||||||||||||| |||| || || Sbjct 265126824 AGGCCCATATCTCCAGATCGCTGGTATAGCTGACAGGAAAGCTCACCATTTGCTACGTAG 265126765 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAG 97287 ||||||| | | || || || ||||| ||||| |||| |||| || Sbjct 265126764 AACTGACAGAGAGCGTGGCACGGAGGCAAGGCCATGAGAGGAAGATCTGAG 265126714 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 |||||||| |||||||| ||||| ||||| ||||| || ||||| | |||||||||||| Sbjct 265123291 TATTCTGCCCCAAAATGTCTCCACTGGAAGCCATACACTGGTCCCAAATCTCCTTCTTCT 265123232 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGC 97521 || | | || || || || || ||| | | || ||||| |||||||| || | | Sbjct 265123231 CTCTGAGTGAGGCCCAGGTTGTCCAAAAATTCACGTGACCCATTGGCATCCCAGATCTTC 265123172 Query 97522 ACACC 97526 || || Sbjct 265123171 ACCCC 265123167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346762800227120