Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 5e-15 >seq1 Length=748055161 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || || |||||||| | || || || || || ||| | ||| ||||| | Sbjct 532227476 ACGATGCAGATTTTCATAAAGACTTTGACGGGGAAGACCATCACTCTTGAGGTTGAACCG 532227535 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||||| ||| ||| | || || || |||||||| |||||||| || |||||| Sbjct 532227536 TCCGATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCTCCTGAT 532227595 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||||| | |||||||| || || || || || ||| | || || ||| | || Sbjct 532227596 CAACAAAGATTGATTTTTGCTGGCAAGCAGTTGGAAGATGGACGTACTTTATCTGCCTAC 532227655 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||||| || || || || | ||| | ||| Sbjct 532227656 AACATTCAGAAGGAGTCTACCCTTCATCTTGTT 532227688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755408632908800