Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq7 93.3 4e-14 seq6 86.0 5e-12 >seq7 Length=260857928 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 |||| |||| ||| ||||| ||||| ||||||||||| || || |||| | Sbjct 53450082 CTCAGGACCAGAGGGAGGGTAGATTCTTTCTGAATGTTGTAGTCAGACAGGGTGCAGCCA 53450141 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || || ||||| || || | ||||||| | |||||| || || | |||||||| ||| Sbjct 53450142 TCTTCCAGCTGCTTGCCTGAAAAGATGAGCCTCTGCTGGTCAGGTGCAATGCCCTCTTTG 53450201 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 ||| ||||| || || | || | ||||| || ||| ||||| | ||| | Sbjct 53450202 TCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGGCA 53450261 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | ||||| ||||| || || ||||| ||||||||| Sbjct 53450262 ATCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 53450297 >seq6 Length=292091736 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| | || | || |||||||| | || || ||||||||||||||||| || Sbjct 193103658 ACCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGATTCTTTTTGAATGTTGTAGTCAGA 193103599 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || || || ||| || ||||| || || || |||| || | |||||| || ||||| Sbjct 193103598 CAGGGTACGACCATCTTCTAGCTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGG 193103539 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 ||||| || ||||| || ||| || || | || | |||||| || || || Sbjct 193103538 GATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGTTCTAC 193103479 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 || | ||| | || ||||| ||||| || || ||| Sbjct 193103478 TTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 193103442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433803878863072