Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq2 113 8e-20 seq4 93.3 8e-14 >seq2 Length=541556283 Score = 113 bits (124), Expect = 8e-20 Identities = 107/133 (80%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 ||||||||||||||||| || |||||||||||||| || |||||||| | |||||||| Sbjct 334503654 GCATTTTTTGGAGCTCAACTTAATTCTTTTATCCACGTGATTATGTATTCATATTATGGC 334503595 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| |||||||| ||| ||||||||||||| ||| | |||| Sbjct 334503594 TTAACTGCATTTGG-CCCATGGATTCAGAAA-TATTTATGGTGGAAACGATATTTGACTA 334503537 Query 52175 TAATGCAGTTGGT 52187 || | ||| |||| Sbjct 334503536 TATTACAGCTGGT 334503524 Score = 105 bits (116), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 |||||| | || | |||| ||||| | | || ||||| | ||||| |||||||| || Sbjct 334509503 GATAGCTGGGGCTCTGTGGTGGTACTTTGTGTCAAAAGGAGTTGAATATTTGGATACAGT 334509444 Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004 ||| ||||| || ||||| ||| || || || ||| || || || |||||||| | Sbjct 334509443 ATTCTTCATTCTGAGGAAGAAAAACAACCAAGTATCTTTCCTTCATGTGTATCATCACTG 334509384 Query 52005 TACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 |||||||||||| | | ||||| || ||||||||| | || ||||| || Sbjct 334509383 TACTATGTTTACATTGTGGTGGATTGGCATTAAATGGGTAGCAGGAGGACA 334509333 >seq4 Length=435153693 Score = 93.3 bits (102), Expect = 8e-14 Identities = 120/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 189467 ATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAG 189526 ||||||||||| ||||| || |||||| | || | || ||||||||||| |||||| Sbjct 92362082 ATGCAGATGGTACAGGAAGGGAAGATGCATGGATTCCTCCGCATGTATTGGGCCAAGAAG 92362023 Query 189527 ATACTTGAATGGACTAGAACACCTGAAGACG-CTTTGAGTTATAGTATCTATTTGAACAA 189585 || || || |||||| | | |||||||| | | | ||||| | ||||||| | || | Sbjct 92362022 ATTCTGGAGTGGACTCGCTCCCCTGAAGAAGCCCTAGAGTT-TGCTATCTATCTCAATGA 92361964 Query 189586 CAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGT 189628 | || | || || |||| |||||| || || ||||||||| Sbjct 92361963 CCGGTTTCAGCTGGATGGCAGGGATCCCAATGGCTACGTAGGT 92361921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923138915560640