Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq6 345 4e-90 seq2 309 3e-79 seq1 102 8e-17 seq3 93.3 4e-14 >seq6 Length=292091736 Score = 345 bits (382), Expect = 4e-90 Identities = 617/888 (69%), Gaps = 17/888 (2%) Strand=Plus/Minus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| ||| |||| | |||||||| | |||||||| || ||||| || ||||| | Sbjct 153786758 TTGACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTCC 153786699 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAAC-AATAGTATTTATCG 16045 |||| || || |||| ||||||||||||| |||||| || | || | | || | Sbjct 153786698 CTTCCAAAGAGATAT---CCATAAAATCAAATAGATTTTCTGCTCTAAAAATCTTGCTAA 153786642 Query 16046 CATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105 | | | |||||||| | ||| || || |||||||| ||||| || ||||||||| Sbjct 153786641 AAGCT-AGTTCCAACATAAGTCTGTCTGCTACAAATTCGATATATTGCTTCATTAAAGTG 153786583 Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165 || |||||||| || || || ||||| | ||||| || ||||| | | |||||| || Sbjct 153786582 CAATTCATTCCAATCAACTTTACAGGCAAAGCTTCAGTCAAAAACTCCTGTTCTATTCTA 153786523 Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTA 16225 || || | | ||| || ||| | ||| | | | || || || | |||||| Sbjct 153786522 ACAGCATTGACGATCATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGTACCAGGTGTTTG 153786463 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 ||||||| || |||||||||||||| || || || || || || || || || |||||| Sbjct 153786462 AACATTAAGCAGGCAAAATCACAATGTAAACCCTCATCTCTGCTAATAAATTCATTTGAA 153786403 Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 || || | || ||||||| |||||||| || ||| ||||| | ||||| |||||| Sbjct 153786402 AAAGTTAATCCAGGCATTAAACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACCA 153786343 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 |||||||| || ||||||||||| ||||| || | | || ||||| || ||| | | Sbjct 153786342 GAAAAGAAGATTCCTTCAACTGCTGCAAAAGCTGCAACACGTTCACCATATGTTGCTTCT 153786283 Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACAC-AGTTCATGTTCTC 16464 || | ||||| | ||||| | ||||| | |||||||| || | |||| || Sbjct 153786282 TTGTCCCCAATCCA--TCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTT-TC 153786226 Query 16465 TATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAA 16524 || ||||| || | | | | ||||||| || ||||| || || || || | Sbjct 153786225 AATGGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTTAATAT--GTGTCAATAAGAAG 153786168 Query 16525 ACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGC 16584 |||||||||||| ||||| |||| ||||||| || || || ||||| ||||| | || Sbjct 153786167 ACTATACATTTCAGAATGTCTATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGC 153786108 Query 16585 TTCGGATATTTGTACTTC-AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCAT 16643 ||| | || |||||||| | |||| | ||| | || ||||| || ||||| |||| Sbjct 153786107 TTCTGTTACCTGTACTTCTTGGCTAAACCGCTTCAACCAA-TTTTCATTTACTATGCCAT 153786049 Query 16644 CGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGT--TATCTGAAAG 16701 | || |||||||| ||| | | | ||| || || | || |||| | | |||| Sbjct 153786048 CACTTGCTGCAAAGAACCCTAACACGTGAGATATGAAGTACTTCTCGTCAGACTTCAAAG 153785989 Query 16702 TTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGC 16761 ||| ||||| || ||| || || | ||| ||||| || | ||||| || || || Sbjct 153785988 TTT--CCCAGTGCTGAATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGC 153785931 Query 16762 AACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAA 16809 | || || |||||||| | || ||||| | ||| |||| || || Sbjct 153785930 CTCTGCTTTCTTATACATGTGTCAAATGTCATGGTACTCAATGGGGAA 153785883 >seq2 Length=541556283 Score = 309 bits (342), Expect = 3e-79 Identities = 520/744 (70%), Gaps = 14/744 (2%) Strand=Plus/Minus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| ||| |||| | |||||||| | ||||| || || ||||| || ||||| | Sbjct 435771120 TTGACATCACTCCCATTCTCTGATATTCTCCTACTCTGTTCTCGAAGAAGTTAGTTTTCC 435771061 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAAC-AATAGTATTTATCG 16045 |||| || || ||||| |||||||||||||| ||||||| || | || | | || | Sbjct 435771060 CTTCCAAAGAGATATTCTCCATAAAATCAAATGGATTTTCTGCTCTAAAAATCTTGCTAA 435771001 Query 16046 CATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105 | || | |||||||| | ||| || || |||||||| || || || ||||||||| Sbjct 435771000 AA-CCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCAATGTATTGCTTCATTAAAGTG 435770942 Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165 || |||||||| || ||||| | | | | | ||| || || || | | |||||| || Sbjct 435770941 CAATTCATTCCAATCAATTTTATATGCAAAGGTTCAGTCAAGAACTCCTGTTCTATTCTA 435770882 Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAA----GTG 16221 || || | ||| || ||| | ||| | || | || || || || ||| Sbjct 435770881 ACAGCACTGACGATAATTTCTTTCACT----TTTTCCTCTGAAGGCTTGTGAACCAGGTG 435770826 Query 16222 TTTAAACATTATACAAGCAAAA-TCACAATGCAATCCTTCGTCCCTACTTATTAACTCGT 16280 ||| ||||||| || |||||| |||||||| || | || || || || || | || | Sbjct 435770825 TTTGAACATTAAGCAGGCAAAAATCACAATGTAAATCCTCATCTCTGCTAATAAGTTCAT 435770766 Query 16281 TTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATG 16340 ||||||| || | || ||||||| |||||||| || | ||| ||||| | ||||| | Sbjct 435770765 TTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAG 435770706 Query 16341 AACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTC 16400 ||||||||||||| || ||||||||||| ||||| || || | | ||||| || ||| Sbjct 435770705 AACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAGCTACAACATGTTCACCATATGTTG 435770646 Query 16401 TAtttttactttctatccattttttagcccaatttgctttttgtttAACAC-AGTTCATG 16459 | ||| | |||||| | ||||| | ||||| | |||||||| || | || Sbjct 435770645 CTTCTTTGTCCCCAATCCATCATAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTG 435770586 Query 16460 TTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATT 16519 || || || ||||| || | | | | ||||||| || ||||||||| || || Sbjct 435770585 TT-TCAATGGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTTAATATAAGTGTCAATA 435770527 Query 16520 AGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCAT 16579 || | | |||||||||| ||||| || |||||||| | || || || ||||| ||||| Sbjct 435770526 AGAAGATTATACATTTCAGAATGTATGCTCTCCATTCCAATTTGGAAGCCATAGAAGCAG 435770467 Query 16580 C-TAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTAT 16638 | ||||| | || | |||||| | ||||| || | || ||||| || | ||| Sbjct 435770466 CGGGGCTTCTGTTACCTATACTTCTTGGCTAAACCGCTCCACCAAATTTTCATTTATTAT 435770407 Query 16639 TCCATCGCTAGCTGCAAAAAACGC 16662 ||||| || |||||||| || || Sbjct 435770406 GCCATCACTTGCTGCAAAGAAAGC 435770383 >seq1 Length=748055161 Score = 102 bits (112), Expect = 8e-17 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| ||| |||| | |||||||| | |||||||| || ||||| || ||||||| Sbjct 529233554 TTGACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTTC 529233613 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 |||| || || ||||| |||||||||||||| ||||||| Sbjct 529233614 CTTCCAAAGAGATATTCTCCATAAAATCAAATGGATTTT 529233652 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || |||||||| || | || ||||||| |||||||| || Sbjct 529237635 TCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 529237694 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||||||||| ||||| || Sbjct 529237695 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAGCT 529237754 Query 16379 ACCAATCGCTCACC 16392 || | || ||||| Sbjct 529237755 ACGACACGTTCACC 529237768 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 ||||||||| || || || | |||||||||||| ||||| || || |||||||| || || Sbjct 529239624 AATATAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATTGCAATTTG 529239683 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || ||||| ||||| | ||||| | || |||||||| Sbjct 529239684 GAAGCCATAGAAGCAGCGGGCTTCTGTTACCTGTACTTC 529239722 >seq3 Length=527952102 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 15869 ATCAATAATAATTAACTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTT 15928 ||| | || ||| || ||||||||| ||| | | || ||||| ||| || | | Sbjct 368162180 ATCTAGAAAAATGAA--TTAAAAATCTGCATCCAAGGTGAAGACATTGTCTGTTGTTTCA 368162237 Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 | |||||||| | ||||||||| || || |||||||| ||||||||||| ||| Sbjct 368162238 GCCATAACTGCAAAGCGTTGATATTCGGAGACCCTTTTTTCAAAAAAATTTGTTTTCCCT 368162297 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 || | |||||||||||||| |||||||| ||||| Sbjct 368162298 TCCAGAGAAATATTTTCCATGAAATCAAAGGGATT 368162332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462483000497600