Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq1 637 3e-178 seq6 84.2 2e-11 >seq1 Length=748055161 Score = 637 bits (706), Expect = 3e-178 Identities = 829/1141 (73%), Gaps = 4/1141 (0%) Strand=Plus/Plus Query 107498 CCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGA 107557 |||||||||| || | | | ||||||||||||||| ||||||| ||||||||| || Sbjct 143878771 CCTGAAGCTGTCACCCATCAACTCCATCAACTGTTCTCGGATCACCAGAGGGGACCCTGA 143878830 Query 107558 AGCAGTGGTCCAGGCCCTCCTAGACAAC-CTGGAAGTGAAGAAAAAGCGGTCGCCTCTCA 107616 || ||| ||||| ||| || || || || ||| | | || ||| | | Sbjct 143878831 TGCCCTGGCTCAGGCAG-CCTTGATAAAGCTAGAGAAAAAGGCAGAAAGGAAACCTTTGA 143878889 Query 107617 CTGGCACCTATTACCTCAACATAAC-CAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAG 107675 | | | | || |||||||| || ||| ||||||| | ||||| || | | ||| | Sbjct 143878890 CCGAGGCGCAGTATCTCAACATGACTCAG-GACTGTGCTCACTTCAGGGTCAATCGGAGG 143878948 Query 107676 TTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTG 107735 ||| | ||||| ||| |||| || || ||| |||| |||||||| ||||| |||||| Sbjct 143878949 TTCTTTCAGTTTCCATTGAGCAAGGAGGAGAAGGACTATCCCATTGCGTACTCAATGGTG 143879008 Query 107736 GTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAAC 107795 | ||||||||||||||||||||||| |||| ||| | || ||||||| || |||||| Sbjct 143879009 ATTCATGAGAAGATTGAAAACTTTGAGAGGCTTCTGAGGGCTCTGTATGCTCCACAGAAC 143879068 Query 107796 ATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCC 107855 || ||||||||||| || ||| |||||| ||||| | ||||| ||||| ||| ||| Sbjct 143879069 ATCTACTGTGTCCATGTAGATAAGAAGTCTCCAGAAGCCTTCAAGGAGGCTGTCGGAGCC 143879128 Query 107856 ATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCC 107915 |||| || |||||||| |||||||| |||||| || |||||| ||||| ||||| Sbjct 143879129 ATTACATCATGCTTCCCAAATGTCTTTGTGGCCAAAAACCTGGTCCAAGTGGTGTATGCA 143879188 Query 107916 TCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTG 107975 |||||||| ||||| ||||| || |||| || ||||| || |||||| | || || ||| Sbjct 143879189 TCCTGGTCTAGAGTACAAGCAGATATGAATTGCATGGAGGAGTTGCTCAACAGTTCTGTG 143879248 Query 107976 CCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAG 108035 || |||| ||| | ||||||| || || || || || ||||||||||| ||||| ||| Sbjct 143879249 CCCTGGAGATACCTGGTGAATACCTGTGGTACTGATTTTCCCATAAAGACAAATGCTGAG 143879308 Query 108036 ATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCT 108095 || || | || ||| ||||||| || |||||||| ||||| || ||| |||| | Sbjct 143879309 ATAGTGAGATCTCTTAAGGTGTTGAATGGGAAGAACAGCATGGAATCAGAGATACCCACC 143879368 Query 108096 GAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACC 108155 || ||||||| |||||| |||| || |||||||| | || || | | || ||| Sbjct 143879369 ACGTACAAAAAATTCCGCTGGCAATATCGTTATGAGGTCAAGGATACGATATTCCGGACC 143879428 Query 108156 AGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTT 108215 | ||||| ||| ||| || || || || ||||||||||||||||||||||||||| Sbjct 143879429 CGAAAGATAAAGCCCCCACCACCCCATGGCTTGCCCATGTTCACAGGGAATGCCTATTTT 143879488 Query 108216 GTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTT 108275 ||||| || |||| |||| ||||||| |||| | ||||| | | | |||| || || Sbjct 143879489 GTGGCTTCCCGAGACTTTATCCAACACCTCTTTAAGAACCCCAGAGCTCAAAAGCTCATT 143879548 Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || ||||| || || |||||||||||||| ||||| ||||||||||| || || | Sbjct 143879549 GAGTGGGTGAAGGATACCTATAGCCCCGATGAACATCTCTGGGCCACTCTCCATAGGATG 143879608 Query 108336 CCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCC 108395 || |||||||||||||| || || || ||||| || | || ||| ||| |||| Sbjct 143879609 CCCTGGATGCCTGGCTCCGTGCCGTATCATGAAAAGTACCATACTTCTGACCTGAATGCC 143879668 Query 108396 ATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTAT 108455 || ||| | | || |||||||| | || || |||||||| | |||||| || ||| Sbjct 143879669 ATTGCCCGCTTTGTGAAGTGGCAAGGCATTGATGGGGATGTCAGAAAGGGGGCCCCCTAT 143879728 Query 108456 GCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTAC 108515 | | ||| |||| ||| | | | ||| |||| | | ||||| || ||||| || Sbjct 143879729 CCCCACTGTACTGGGATCTACCAGCGGGGTGTCTGTGTGTTTGGGGCTGGAGACCTACAC 143879788 Query 108516 TGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAAC 108575 | || || || | || || || |||| |||||||||||||||| | | ||||| | Sbjct 143879789 TTCATGCTTCAAAGTCACCATCTGCTGGCCAACAAGTTTGACCCGAAGATAGATGACAGT 143879848 Query 108576 GTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGA 108635 | || |||||||| || || || || || ||||| ||||| || |||| ||| | ||| Sbjct 143879849 GCACTCCAGTGCTTGGAGGAATATCTGCGGCATAAAGCCATTTACGGGAGGGAAATCTGA 143879908 Query 108636 G 108636 | Sbjct 143879909 G 143879909 >seq6 Length=292091736 Score = 84.2 bits (92), Expect = 2e-11 Identities = 227/344 (66%), Gaps = 4/344 (1%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||| || ||| || |||||||| || || | ||||| || | || Sbjct 138855553 CCCCTCAGTAAAGAGGAAGAAGAATTTCCCATTGCATATTCAGTAGTGGTTTATCACAAA 138855612 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || |||| |||| ||||| || || || | || | |||||||| || || | Sbjct 138855613 ATCGAAATGCTTGATCGGCTCCTAAGAACCATCTACACACCTCAGAATTATTATTGCATT 138855672 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 ||||| || || || ||||| | || || || || |||| |||| || || Sbjct 138855673 CACGTTGACAAAAAATCTCCAGAATCCTTTTTAGCAGCAGTGAAGGGCATTGCATCTTGT 138855732 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| ||||||||||| |||||| | ||| || || ||||| || ||| || Sbjct 138855733 TTCAATAATGTCTTCATTGCCAGTCAACTGGAGAATGTTGTGTATGCATCATGGAGTAGG 138855792 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGC--CATGGAAGT 107985 || ||||| || || ||||| ||| ||| | || |||| | ||| | |||||| | Sbjct 138855793 GTCCAAGCAGATCTCAACTGCATGAGAGA-TCTCTACAGA-CAGAGTTCAAAATGGAAAT 138855850 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAAT 108029 | || | ||| || || | || ||||| || || |||||| Sbjct 138855851 ATTTGATAAATCTGTGTGGAATGGATTTCCCAATTAAAACCAAT 138855894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348247509457584